Variant report

Variant	rs72833399
Chromosome Location	chr5:146932353-146932354
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10463277	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10463278	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1126014	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11949718	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11951211	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11953038	0.97[EUR][1000 genomes]
rs12055156	0.97[EUR][1000 genomes]
rs12108716	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12109947	0.94[EUR][1000 genomes]
rs1432846	0.97[EUR][1000 genomes]
rs1432847	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17106850	0.97[EUR][1000 genomes]
rs17650890	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1897561	0.97[EUR][1000 genomes]
rs41410444	0.97[EUR][1000 genomes]
rs41506250	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6580470	0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs66795022	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs67406727	0.97[EUR][1000 genomes]
rs67599220	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68165938	0.97[EUR][1000 genomes]
rs6871170	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6876990	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6877330	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72833384	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72833394	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72833397	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72833398	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72833401	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7713359	0.99[EUR][1000 genomes]
rs7715946	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7716144	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:146915600-146933400	Weak transcription	Ovary	ovary
2	chr5:146927800-146933200	Weak transcription	NHLF	lung
3	chr5:146927800-146933200	Weak transcription	Osteobl	bone
4	chr5:146927800-146933400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr5:146928000-146932600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr5:146930400-146933600	Enhancers	Rectal Smooth Muscle	rectum
7	chr5:146930600-146932800	Enhancers	Colon Smooth Muscle	Colon
8	chr5:146931200-146932400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr5:146931200-146934000	Enhancers	Fetal Stomach	stomach
10	chr5:146931400-146933200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr5:146931400-146933200	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr5:146931400-146933400	Weak transcription	Fetal Lung	lung
13	chr5:146931400-146933400	Weak transcription	Left Ventricle	heart
14	chr5:146931600-146932600	Weak transcription	Right Atrium	heart
15	chr5:146931600-146933400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr5:146931600-146933600	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr5:146931600-146933600	Weak transcription	HSMMtube	muscle
18	chr5:146931600-146933800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr5:146932000-146935000	Enhancers	Placenta Amnion	Placenta Amnion
20	chr5:146932200-146932600	Flanking Active TSS	Stomach Smooth Muscle	stomach
21	chr5:146932200-146933400	Weak transcription	NH-A	brain
22	chr5:146932200-146935400	Enhancers	Fetal Muscle Leg	muscle

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