Variant report

Variant	rs67406727
Chromosome Location	chr5:146918081-146918082
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10463277	0.97[EUR][1000 genomes]
rs10463278	0.91[AFR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1126014	0.99[EUR][1000 genomes]
rs11949718	0.99[EUR][1000 genomes]
rs11951211	0.94[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs11953038	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12055156	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12108716	0.99[EUR][1000 genomes]
rs12109947	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1432846	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1432847	0.93[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs1594660	0.83[ASN][1000 genomes]
rs17106850	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17650890	0.99[EUR][1000 genomes]
rs1897560	0.83[ASN][1000 genomes]
rs1897561	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34055697	0.83[ASN][1000 genomes]
rs34506199	0.83[ASN][1000 genomes]
rs35983616	0.83[ASN][1000 genomes]
rs41410444	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41506250	0.92[AFR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6580470	0.94[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs66795022	0.93[AFR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67599220	0.97[EUR][1000 genomes]
rs68165938	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6871170	0.97[EUR][1000 genomes]
rs6876990	0.90[AFR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6877330	0.93[AFR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72833384	0.99[EUR][1000 genomes]
rs72833394	0.97[EUR][1000 genomes]
rs72833397	0.97[EUR][1000 genomes]
rs72833398	0.97[EUR][1000 genomes]
rs72833399	0.97[EUR][1000 genomes]
rs72833401	0.97[EUR][1000 genomes]
rs7713359	0.93[AFR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7715946	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7716144	0.99[EUR][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:146914000-146918600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr5:146915000-146918400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr5:146915600-146933400	Weak transcription	Ovary	ovary
4	chr5:146916000-146918600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr5:146916400-146918200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr5:146916400-146918600	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr5:146916400-146918600	Weak transcription	Rectal Smooth Muscle	rectum
8	chr5:146916800-146918600	Weak transcription	HUVEC	blood vessel
9	chr5:146916800-146918600	Weak transcription	NHLF	lung
10	chr5:146917400-146919000	Enhancers	NH-A	brain
11	chr5:146917400-146920200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr5:146917800-146919000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr5:146917800-146919600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr5:146917800-146919800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr5:146917800-146919800	Enhancers	NHDF-Ad	bronchial
16	chr5:146917800-146920000	Enhancers	Osteobl	bone
17	chr5:146918000-146918400	Weak transcription	HMEC	breast
18	chr5:146918000-146918800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr5:146918000-146918800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr5:146918000-146918800	Enhancers	HSMM	muscle
21	chr5:146918000-146919000	Enhancers	HSMMtube	muscle
22	chr5:146918000-146919200	Enhancers	Colon Smooth Muscle	Colon
23	chr5:146918000-146919800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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