Variant report

Variant	rs17650890
Chromosome Location	chr5:146911439-146911440
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10463277	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10463278	0.97[EUR][1000 genomes]
rs1126014	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11949718	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11951211	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11953038	0.99[EUR][1000 genomes]
rs12055156	0.99[EUR][1000 genomes]
rs12108716	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12109947	0.96[EUR][1000 genomes]
rs1432846	0.99[EUR][1000 genomes]
rs1432847	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17106850	0.99[EUR][1000 genomes]
rs1897561	0.99[EUR][1000 genomes]
rs41410444	0.99[EUR][1000 genomes]
rs41506250	0.97[EUR][1000 genomes]
rs6580470	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66795022	0.97[EUR][1000 genomes]
rs67406727	0.99[EUR][1000 genomes]
rs67599220	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs68165938	0.99[EUR][1000 genomes]
rs6871170	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6876990	0.97[EUR][1000 genomes]
rs6877330	0.97[EUR][1000 genomes]
rs72833384	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72833394	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72833397	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72833398	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72833399	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72833401	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7713359	0.97[EUR][1000 genomes]
rs7715946	0.97[EUR][1000 genomes]
rs7716144	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7726760	1.00[CHB][hapmap]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:146910000-146912000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr5:146910000-146912000	Enhancers	NH-A	brain
3	chr5:146910000-146912200	Enhancers	HUVEC	blood vessel
4	chr5:146910000-146912400	Enhancers	HMEC	breast
5	chr5:146910200-146912000	Enhancers	NHLF	lung
6	chr5:146910200-146912000	Enhancers	Osteobl	bone
7	chr5:146910200-146912200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr5:146910200-146912200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr5:146910200-146912200	Enhancers	Muscle Satellite Cultured Cells	--
10	chr5:146910200-146912400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr5:146910200-146912400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr5:146910400-146912200	Enhancers	NHEK	skin
13	chr5:146910800-146912000	Enhancers	Colon Smooth Muscle	Colon
14	chr5:146910800-146914200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr5:146911000-146912400	Enhancers	Rectal Smooth Muscle	rectum
16	chr5:146911200-146911600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr5:146911200-146911600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr5:146911200-146912000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr5:146911200-146912400	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr5:146911200-146914000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr5:146911400-146913800	Weak transcription	NHDF-Ad	bronchial
22	chr5:146911400-146914400	Weak transcription	HSMM	muscle

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