Variant report

Variant	rs6580470
Chromosome Location	chr5:146921478-146921479
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10463277	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10463278	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1126014	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11949718	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11951211	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11953038	0.94[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs12055156	0.91[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs12108716	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12109947	0.84[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs1432846	0.93[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs1432847	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17106850	0.89[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs17650890	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1897561	0.98[EUR][1000 genomes]
rs41410444	0.96[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs41506250	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66795022	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67406727	0.94[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs67599220	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs68165938	0.96[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs6871170	0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6876990	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6877330	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72833384	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72833394	0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72833397	0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72833398	0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72833399	0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72833401	0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7713359	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7715946	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7716144	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7726760	1.00[CHB][hapmap]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:146915600-146933400	Weak transcription	Ovary	ovary
2	chr5:146919000-146923800	Weak transcription	HUVEC	blood vessel

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links