Variant report

Variant	rs67599220
Chromosome Location	chr5:146930385-146930386
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10463277	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10463278	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1126014	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11949718	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11951211	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11953038	0.97[EUR][1000 genomes]
rs12055156	0.97[EUR][1000 genomes]
rs12108716	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12109947	0.94[EUR][1000 genomes]
rs1432846	0.97[EUR][1000 genomes]
rs1432847	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17106850	0.97[EUR][1000 genomes]
rs17650890	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1897561	0.97[EUR][1000 genomes]
rs41410444	0.97[EUR][1000 genomes]
rs41506250	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6580470	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs66795022	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs67406727	0.97[EUR][1000 genomes]
rs68165938	0.97[EUR][1000 genomes]
rs6871170	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6876990	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6877330	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72833384	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72833394	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72833397	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72833398	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72833399	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72833401	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7713359	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7715946	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7716144	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:146915600-146933400	Weak transcription	Ovary	ovary
2	chr5:146927800-146930600	Weak transcription	Colon Smooth Muscle	Colon
3	chr5:146927800-146933200	Weak transcription	NHLF	lung
4	chr5:146927800-146933200	Weak transcription	Osteobl	bone
5	chr5:146927800-146933400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr5:146928000-146932600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr5:146928200-146930600	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr5:146928400-146930400	Weak transcription	Rectal Smooth Muscle	rectum

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