Variant report

Variant	rs12129274
Chromosome Location	chr1:95464900-95464901
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

rs_ID	r²[population]
rs11165283	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs11165284	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs12119469	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs12119701	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12123807	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs12126245	1.00[JPT][hapmap]
rs12137333	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17112852	1.00[CHB][hapmap]
rs4630158	1.00[CEU][hapmap]
rs4847374	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs4847376	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7527765	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7532763	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95429000-95467600	Weak transcription	Stomach Smooth Muscle	stomach
2	chr1:95447000-95490800	Weak transcription	Fetal Intestine Large	intestine
3	chr1:95448200-95491000	Weak transcription	Primary B cells from cord blood	blood
4	chr1:95452600-95467000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr1:95452800-95468400	Weak transcription	Fetal Intestine Small	intestine
6	chr1:95453600-95468400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr1:95454000-95467600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr1:95455200-95473600	Weak transcription	Gastric	stomach
9	chr1:95455400-95467800	Weak transcription	Brain Substantia Nigra	brain
10	chr1:95455600-95465000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr1:95455600-95467600	Weak transcription	Brain Hippocampus Middle	brain
12	chr1:95455800-95467800	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr1:95456200-95465000	Weak transcription	Fetal Muscle Leg	muscle
14	chr1:95457000-95468600	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr1:95459400-95465800	Weak transcription	Esophagus	oesophagus
16	chr1:95459400-95467600	Weak transcription	Ovary	ovary
17	chr1:95459600-95473000	Weak transcription	Aorta	Aorta
18	chr1:95459600-95473000	Weak transcription	Pancreas	Pancrea
19	chr1:95459800-95465000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr1:95460200-95467600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr1:95460400-95467600	Weak transcription	Right Atrium	heart
22	chr1:95460400-95467600	Weak transcription	Right Ventricle	heart
23	chr1:95460400-95467600	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr1:95460400-95467800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr1:95460400-95478400	Weak transcription	Left Ventricle	heart
26	chr1:95460600-95465400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr1:95460600-95468000	Weak transcription	Adipose Nuclei	Adipose
28	chr1:95461200-95469600	Enhancers	Cortex derived primary cultured neurospheres	brain
29	chr1:95461400-95468000	Weak transcription	NH-A	brain
30	chr1:95461600-95466000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr1:95461600-95467400	Weak transcription	Fetal Kidney	kidney
32	chr1:95461600-95467600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr1:95462800-95465600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr1:95463000-95465800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr1:95463200-95465000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr1:95463200-95466200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr1:95463400-95467800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr1:95463600-95468000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr1:95463800-95468000	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr1:95464000-95465000	Weak transcription	HSMMtube	muscle
41	chr1:95464000-95466400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr1:95464000-95473000	Weak transcription	Lung	lung
43	chr1:95464200-95466800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr1:95464800-95467200	Enhancers	iPS-18 Cell Line	embryonic stem cell

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