Variant report

Variant	rs11165284
Chromosome Location	chr1:95453727-95453728
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11165283	1.00[CHB][hapmap];0.89[CHD][hapmap];0.95[ASN][1000 genomes]
rs12119383	0.90[ASN][1000 genomes]
rs12119469	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs12119701	0.88[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12121738	0.86[ASN][1000 genomes]
rs12123807	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12124097	0.93[ASN][1000 genomes]
rs12126245	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12129274	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs12137333	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17112852	1.00[CEU][hapmap];0.88[CHB][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4847374	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs4847375	0.93[ASN][1000 genomes]
rs4847376	0.88[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs58602136	0.93[ASN][1000 genomes]
rs61772641	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7527765	0.88[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7532763	0.85[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs9787257	0.93[ASN][1000 genomes]
rs9787343	0.93[ASN][1000 genomes]

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95429000-95467600	Weak transcription	Stomach Smooth Muscle	stomach
2	chr1:95437600-95455600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr1:95437800-95455000	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr1:95437800-95458400	Weak transcription	Liver	Liver
5	chr1:95446800-95455000	Weak transcription	Left Ventricle	heart
6	chr1:95446800-95457800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr1:95447000-95490800	Weak transcription	Fetal Intestine Large	intestine
8	chr1:95447600-95460400	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr1:95448000-95455000	Weak transcription	Fetal Muscle Trunk	muscle
10	chr1:95448200-95491000	Weak transcription	Primary B cells from cord blood	blood
11	chr1:95448800-95455000	Weak transcription	Duodenum Mucosa	Duodenum
12	chr1:95448800-95460000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr1:95449000-95455000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr1:95449000-95455000	Weak transcription	Brain Hippocampus Middle	brain
15	chr1:95449000-95455000	Weak transcription	Stomach Mucosa	stomach
16	chr1:95449000-95455400	Weak transcription	Brain Angular Gyrus	brain
17	chr1:95449000-95458600	Weak transcription	Right Ventricle	heart
18	chr1:95449000-95460800	Weak transcription	Fetal Kidney	kidney
19	chr1:95449200-95453800	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr1:95449200-95455000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr1:95449200-95455000	Weak transcription	Fetal Muscle Leg	muscle
22	chr1:95449200-95455000	Weak transcription	Rectal Smooth Muscle	rectum
23	chr1:95449200-95455000	Weak transcription	Right Atrium	heart
24	chr1:95449200-95455400	Weak transcription	Fetal Heart	heart
25	chr1:95450600-95460000	Weak transcription	Fetal Lung	lung
26	chr1:95451200-95454400	Enhancers	HepG2	liver
27	chr1:95451400-95455000	Weak transcription	Fetal Stomach	stomach
28	chr1:95451800-95457200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
29	chr1:95452000-95455000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr1:95452200-95454400	Enhancers	Muscle Satellite Cultured Cells	--
31	chr1:95452200-95455000	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr1:95452400-95453800	Enhancers	Spleen	Spleen
33	chr1:95452400-95454000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr1:95452400-95454000	Enhancers	Osteobl	bone
35	chr1:95452400-95454200	Flanking Active TSS	HSMMtube	muscle
36	chr1:95452400-95454200	Enhancers	NHLF	lung
37	chr1:95452400-95454400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr1:95452400-95454400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr1:95452600-95454200	Enhancers	Lung	lung
40	chr1:95452600-95454200	Enhancers	Pancreas	Pancrea
41	chr1:95452600-95467000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr1:95452800-95459200	Weak transcription	Aorta	Aorta
43	chr1:95452800-95460000	Weak transcription	Primary T cells from cord blood	blood
44	chr1:95452800-95468400	Weak transcription	Fetal Intestine Small	intestine
45	chr1:95453200-95454200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr1:95453200-95463200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr1:95453400-95454200	Enhancers	NH-A	brain
48	chr1:95453600-95454200	Enhancers	HSMM	muscle
49	chr1:95453600-95454200	Enhancers	HUVEC	blood vessel
50	chr1:95453600-95459200	Weak transcription	Adipose Nuclei	Adipose

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