The 2.0 version of rSNPBase

Variant report

Variant rs58602136
Chromosome Location chr1:95460320-95460321
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:56 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:95429000-95467600 Weak transcription Stomach Smooth Muscle stomach
2 chr1:95447000-95490800 Weak transcription Fetal Intestine Large intestine
3 chr1:95447600-95460400 Weak transcription Rectal Mucosa Donor 31 rectum
4 chr1:95448200-95491000 Weak transcription Primary B cells from cord blood blood
5 chr1:95449000-95460800 Weak transcription Fetal Kidney kidney
6 chr1:95452600-95467000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
7 chr1:95452800-95468400 Weak transcription Fetal Intestine Small intestine
8 chr1:95453200-95463200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
9 chr1:95453600-95468400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
10 chr1:95454000-95467600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
11 chr1:95455200-95473600 Weak transcription Gastric stomach
12 chr1:95455400-95467800 Weak transcription Brain Substantia Nigra brain
13 chr1:95455600-95461000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
14 chr1:95455600-95465000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
15 chr1:95455600-95467600 Weak transcription Brain Hippocampus Middle brain
16 chr1:95455800-95463400 Weak transcription HSMMtube muscle
17 chr1:95455800-95463600 Weak transcription ES-I3 Cell Line embryonic stem cell
18 chr1:95455800-95467800 Weak transcription Sigmoid Colon Sigmoid Colon
19 chr1:95456000-95461400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
20 chr1:95456200-95461200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
21 chr1:95456200-95465000 Weak transcription Fetal Muscle Leg muscle
22 chr1:95457000-95468600 Weak transcription Pancreatic Islets Pancreatic Islet
23 chr1:95457800-95460400 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
24 chr1:95457800-95461800 Enhancers HUVEC blood vessel
25 chr1:95459000-95460600 Enhancers HepG2 liver
26 chr1:95459200-95460400 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
27 chr1:95459200-95460400 Enhancers Left Ventricle heart
28 chr1:95459200-95460400 Enhancers Skeletal Muscle Male skeletal muscle
29 chr1:95459200-95460400 Enhancers Hela-S3 cervix
30 chr1:95459200-95460600 Enhancers Adipose Nuclei Adipose
31 chr1:95459200-95460600 Enhancers Osteobl bone
32 chr1:95459400-95460600 Enhancers Breast Myoepithelial Primary Cells Breast
33 chr1:95459400-95465800 Weak transcription Esophagus oesophagus
34 chr1:95459400-95467600 Weak transcription Ovary ovary
35 chr1:95459600-95460600 Enhancers Placenta Amnion Placenta Amnion
36 chr1:95459600-95461400 Weak transcription Muscle Satellite Cultured Cells --
37 chr1:95459600-95473000 Weak transcription Aorta Aorta
38 chr1:95459600-95473000 Weak transcription Pancreas Pancrea
39 chr1:95459800-95460800 Enhancers Primary T helper cells PMA-I stimulated --
40 chr1:95459800-95461000 Enhancers Primary T helper naive cells from peripheral blood blood
41 chr1:95459800-95461600 Enhancers Primary T helper naive cells fromperipheralblood blood
42 chr1:95459800-95465000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
43 chr1:95460000-95460400 Enhancers Brain Dorsolateral Prefrontal Cortex brain
44 chr1:95460000-95460600 Enhancers Brain Anterior Caudate brain
45 chr1:95460000-95461000 Enhancers Primary T cells from cord blood blood
46 chr1:95460000-95461000 Enhancers Primary T killer naive cells fromperipheralblood blood
47 chr1:95460200-95460400 Enhancers Lung lung
48 chr1:95460200-95460400 Enhancers Right Atrium heart
49 chr1:95460200-95460400 Enhancers Right Ventricle heart
50 chr1:95460200-95460600 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --

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Last update: Aug 31, 2015