Variant report

Variant	rs4847376
Chromosome Location	chr1:95486866-95486867
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:95485808..95487834-chr1:95490892..95493366,2	K562	blood:

Variant related genes	Relation type
ENSG00000172339	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11165280	0.81[ASN][1000 genomes]
rs11165283	0.88[CHB][hapmap];0.89[CHD][hapmap];0.98[ASN][1000 genomes]
rs11165284	0.88[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12047813	1.00[YRI][hapmap]
rs12063255	0.81[EUR][1000 genomes]
rs12092678	0.81[ASN][1000 genomes]
rs12119383	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12119469	1.00[ASW][hapmap];1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.86[ASN][1000 genomes]
rs12119701	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12121738	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12123807	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12124097	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12124647	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12126245	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12129274	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12137333	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12139069	0.86[ASN][1000 genomes]
rs12141083	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12142619	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17112852	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs4847374	1.00[ASW][hapmap];1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4847375	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58602136	1.00[ASN][1000 genomes]
rs61772635	0.81[ASN][1000 genomes]
rs61772636	0.81[ASN][1000 genomes]
rs61772641	1.00[ASN][1000 genomes]
rs7527765	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7532763	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9787257	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9787343	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95447000-95490800	Weak transcription	Fetal Intestine Large	intestine
2	chr1:95448200-95491000	Weak transcription	Primary B cells from cord blood	blood
3	chr1:95469200-95487200	Weak transcription	Small Intestine	intestine
4	chr1:95476000-95490800	Weak transcription	Primary T cells from cord blood	blood
5	chr1:95480000-95487000	Weak transcription	Brain Angular Gyrus	brain
6	chr1:95480000-95508800	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr1:95480200-95487000	Weak transcription	HUVEC	blood vessel
8	chr1:95480200-95487200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr1:95480200-95487200	Weak transcription	Ovary	ovary
10	chr1:95480200-95490600	Weak transcription	Liver	Liver
11	chr1:95480600-95487200	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr1:95480600-95487800	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr1:95480600-95488000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr1:95480600-95491400	Weak transcription	Fetal Intestine Small	intestine
15	chr1:95480800-95490800	Weak transcription	Left Ventricle	heart
16	chr1:95481000-95487000	Weak transcription	Fetal Brain Male	brain
17	chr1:95482400-95487400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr1:95483000-95487000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr1:95483400-95487400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr1:95484000-95487200	Weak transcription	Pancreas	Pancrea
21	chr1:95484000-95491000	Weak transcription	Psoas Muscle	Psoas
22	chr1:95484200-95488800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr1:95484600-95487000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr1:95484600-95489000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr1:95484600-95491000	Weak transcription	Thymus	Thymus
26	chr1:95484600-95495000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr1:95484800-95487200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr1:95484800-95487200	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr1:95484800-95489400	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr1:95484800-95490000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr1:95484800-95491600	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr1:95484800-95494600	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr1:95485000-95487000	Weak transcription	Fetal Kidney	kidney
34	chr1:95485000-95487000	Weak transcription	Stomach Mucosa	stomach
35	chr1:95485000-95487000	Weak transcription	NHDF-Ad	bronchial
36	chr1:95485000-95487200	Weak transcription	Adipose Nuclei	Adipose
37	chr1:95485000-95487400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr1:95485000-95500400	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr1:95485200-95487000	Weak transcription	A549	lung
40	chr1:95485200-95487000	Weak transcription	HSMMtube	muscle
41	chr1:95485200-95507000	Weak transcription	Fetal Heart	heart
42	chr1:95486200-95487400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr1:95486400-95487000	Enhancers	Muscle Satellite Cultured Cells	--
44	chr1:95486400-95487200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr1:95486400-95487200	Enhancers	Duodenum Smooth Muscle	Duodenum
46	chr1:95486400-95487200	Enhancers	Fetal Lung	lung
47	chr1:95486400-95487200	Enhancers	HSMM	muscle
48	chr1:95486400-95488800	Enhancers	Breast Myoepithelial Primary Cells	Breast
49	chr1:95486400-95489600	Enhancers	HMEC	breast
50	chr1:95486400-95490400	Enhancers	Cortex derived primary cultured neurospheres	brain

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