Variant report

Variant	rs7527765
Chromosome Location	chr1:95470811-95470812
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:95465187..95468061-chr1:95468404..95471127,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11165280	0.81[ASN][1000 genomes]
rs11165283	1.00[CEU][hapmap];0.88[CHB][hapmap];0.89[CHD][hapmap];0.91[GIH][hapmap];0.82[MKK][hapmap];0.90[TSI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11165284	0.88[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12092678	0.81[ASN][1000 genomes]
rs12119383	0.93[ASN][1000 genomes]
rs12119469	0.88[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs12119701	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12121738	0.88[ASN][1000 genomes]
rs12123807	1.00[ASW][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12124097	1.00[ASN][1000 genomes]
rs12124647	0.83[ASN][1000 genomes]
rs12126245	0.82[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12129274	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12137333	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12139069	0.86[ASN][1000 genomes]
rs12141083	0.83[ASN][1000 genomes]
rs12142619	0.86[ASN][1000 genomes]
rs17112852	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs4630158	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4847374	0.88[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs4847375	1.00[ASN][1000 genomes]
rs4847376	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs58602136	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61772635	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61772636	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61772641	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7532763	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9787257	1.00[ASN][1000 genomes]
rs9787343	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3434137	chr1:95470240-95471189	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95447000-95490800	Weak transcription	Fetal Intestine Large	intestine
2	chr1:95448200-95491000	Weak transcription	Primary B cells from cord blood	blood
3	chr1:95455200-95473600	Weak transcription	Gastric	stomach
4	chr1:95459600-95473000	Weak transcription	Aorta	Aorta
5	chr1:95459600-95473000	Weak transcription	Pancreas	Pancrea
6	chr1:95460400-95478400	Weak transcription	Left Ventricle	heart
7	chr1:95464000-95473000	Weak transcription	Lung	lung
8	chr1:95468000-95472200	Weak transcription	Placenta	Placenta
9	chr1:95468000-95472800	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr1:95468600-95482400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr1:95468800-95472000	Weak transcription	HSMMtube	muscle
12	chr1:95468800-95472800	Weak transcription	HMEC	breast
13	chr1:95468800-95473000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr1:95468800-95473200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr1:95468800-95479600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr1:95469000-95472000	Weak transcription	Fetal Kidney	kidney
17	chr1:95469000-95472000	Weak transcription	Fetal Stomach	stomach
18	chr1:95469000-95472200	Weak transcription	HSMM	muscle
19	chr1:95469000-95472800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr1:95469000-95479600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr1:95469200-95471200	Weak transcription	Fetal Muscle Leg	muscle
22	chr1:95469200-95472000	Weak transcription	Fetal Lung	lung
23	chr1:95469200-95472800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr1:95469200-95478000	Weak transcription	Ovary	ovary
25	chr1:95469200-95479600	Weak transcription	Fetal Intestine Small	intestine
26	chr1:95469200-95487200	Weak transcription	Small Intestine	intestine
27	chr1:95469400-95472200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr1:95469400-95472200	Weak transcription	NHLF	lung
29	chr1:95469400-95472600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr1:95469400-95478800	Weak transcription	HepG2	liver
31	chr1:95469600-95477800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr1:95469600-95477800	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr1:95469800-95472200	Weak transcription	NHEK	skin
34	chr1:95470600-95473600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr1:95470800-95471800	Enhancers	K562	blood
36	chr1:95470800-95472400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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