Variant report

Variant	rs11165283
Chromosome Location	chr1:95452586-95452587
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:95402811..95405295-chr1:95450498..95453342,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11165280	0.83[ASN][1000 genomes]
rs11165284	1.00[CHB][hapmap];0.89[CHD][hapmap];0.95[ASN][1000 genomes]
rs12092678	0.83[ASN][1000 genomes]
rs12119383	0.95[ASN][1000 genomes]
rs12119469	0.89[CHD][hapmap];0.83[ASN][1000 genomes]
rs12119701	0.88[CHB][hapmap];0.98[ASN][1000 genomes]
rs12121738	0.90[ASN][1000 genomes]
rs12123807	1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[ASN][1000 genomes]
rs12124097	0.98[ASN][1000 genomes]
rs12124647	0.81[ASN][1000 genomes]
rs12126245	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12129274	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs12137333	0.88[CHB][hapmap];0.89[CHD][hapmap];0.98[ASN][1000 genomes]
rs12139069	0.83[ASN][1000 genomes]
rs12141083	0.81[ASN][1000 genomes]
rs12142619	0.83[ASN][1000 genomes]
rs17112852	0.88[CHB][hapmap];0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4630158	1.00[CEU][hapmap];0.91[GIH][hapmap];0.90[TSI][hapmap];0.80[EUR][1000 genomes]
rs4847374	1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[ASN][1000 genomes]
rs4847375	0.98[ASN][1000 genomes]
rs4847376	0.88[CHB][hapmap];0.89[CHD][hapmap];0.98[ASN][1000 genomes]
rs58602136	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61772635	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61772636	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61772641	0.98[ASN][1000 genomes]
rs7527765	1.00[CEU][hapmap];0.88[CHB][hapmap];0.89[CHD][hapmap];0.91[GIH][hapmap];0.82[MKK][hapmap];0.90[TSI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7532763	1.00[CEU][hapmap];0.85[CHB][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9787257	0.98[ASN][1000 genomes]
rs9787343	0.98[ASN][1000 genomes]

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95429000-95467600	Weak transcription	Stomach Smooth Muscle	stomach
2	chr1:95437600-95455600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr1:95437800-95455000	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr1:95437800-95458400	Weak transcription	Liver	Liver
5	chr1:95446800-95455000	Weak transcription	Left Ventricle	heart
6	chr1:95446800-95457800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr1:95447000-95490800	Weak transcription	Fetal Intestine Large	intestine
8	chr1:95447600-95460400	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr1:95448000-95455000	Weak transcription	Fetal Muscle Trunk	muscle
10	chr1:95448200-95491000	Weak transcription	Primary B cells from cord blood	blood
11	chr1:95448800-95455000	Weak transcription	Duodenum Mucosa	Duodenum
12	chr1:95448800-95460000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr1:95449000-95453600	Weak transcription	Psoas Muscle	Psoas
14	chr1:95449000-95455000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr1:95449000-95455000	Weak transcription	Brain Hippocampus Middle	brain
16	chr1:95449000-95455000	Weak transcription	Stomach Mucosa	stomach
17	chr1:95449000-95455400	Weak transcription	Brain Angular Gyrus	brain
18	chr1:95449000-95458600	Weak transcription	Right Ventricle	heart
19	chr1:95449000-95460800	Weak transcription	Fetal Kidney	kidney
20	chr1:95449200-95452600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr1:95449200-95452600	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr1:95449200-95452800	Weak transcription	Adipose Nuclei	Adipose
23	chr1:95449200-95453800	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr1:95449200-95455000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr1:95449200-95455000	Weak transcription	Fetal Muscle Leg	muscle
26	chr1:95449200-95455000	Weak transcription	Rectal Smooth Muscle	rectum
27	chr1:95449200-95455000	Weak transcription	Right Atrium	heart
28	chr1:95449200-95455400	Weak transcription	Fetal Heart	heart
29	chr1:95449400-95452600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr1:95449400-95453600	Weak transcription	HUVEC	blood vessel
31	chr1:95450000-95452600	Weak transcription	Aorta	Aorta
32	chr1:95450600-95460000	Weak transcription	Fetal Lung	lung
33	chr1:95451000-95453200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr1:95451200-95454400	Enhancers	HepG2	liver
35	chr1:95451400-95455000	Weak transcription	Fetal Stomach	stomach
36	chr1:95451800-95452600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr1:95451800-95457200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
38	chr1:95452000-95455000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr1:95452200-95452800	Strong transcription	Fetal Intestine Small	intestine
40	chr1:95452200-95454400	Enhancers	Muscle Satellite Cultured Cells	--
41	chr1:95452200-95455000	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr1:95452400-95452600	Enhancers	HSMM	muscle
43	chr1:95452400-95452800	Strong transcription	Primary T cells from cord blood	blood
44	chr1:95452400-95452800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr1:95452400-95453000	Enhancers	NH-A	brain
46	chr1:95452400-95453000	Enhancers	NHDF-Ad	bronchial
47	chr1:95452400-95453000	Enhancers	NHEK	skin
48	chr1:95452400-95453600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr1:95452400-95453600	Enhancers	HMEC	breast
50	chr1:95452400-95453800	Enhancers	Spleen	Spleen

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