Variant report

Variant	rs12137333
Chromosome Location	chr1:95478126-95478127
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11165280	0.81[ASN][1000 genomes]
rs11165283	0.88[CHB][hapmap];0.89[CHD][hapmap];0.98[ASN][1000 genomes]
rs11165284	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12092678	0.81[ASN][1000 genomes]
rs12119383	0.93[ASN][1000 genomes]
rs12119469	0.88[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs12119701	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12121738	0.88[ASN][1000 genomes]
rs12123807	0.88[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12124097	1.00[ASN][1000 genomes]
rs12124647	0.83[ASN][1000 genomes]
rs12126245	0.82[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12129274	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12139069	0.86[ASN][1000 genomes]
rs12141083	0.83[ASN][1000 genomes]
rs12142619	0.86[ASN][1000 genomes]
rs17112852	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4847374	0.88[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs4847375	1.00[ASN][1000 genomes]
rs4847376	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs58602136	1.00[ASN][1000 genomes]
rs61772635	0.81[ASN][1000 genomes]
rs61772636	0.81[ASN][1000 genomes]
rs61772641	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7527765	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7532763	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9787257	1.00[ASN][1000 genomes]
rs9787343	1.00[ASN][1000 genomes]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95447000-95490800	Weak transcription	Fetal Intestine Large	intestine
2	chr1:95448200-95491000	Weak transcription	Primary B cells from cord blood	blood
3	chr1:95460400-95478400	Weak transcription	Left Ventricle	heart
4	chr1:95468600-95482400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr1:95468800-95479600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr1:95469000-95479600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr1:95469200-95479600	Weak transcription	Fetal Intestine Small	intestine
8	chr1:95469200-95487200	Weak transcription	Small Intestine	intestine
9	chr1:95469400-95478800	Weak transcription	HepG2	liver
10	chr1:95473000-95478200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr1:95473400-95479800	Weak transcription	Pancreas	Pancrea
12	chr1:95473600-95481200	Weak transcription	Aorta	Aorta
13	chr1:95473800-95479200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr1:95476000-95490800	Weak transcription	Primary T cells from cord blood	blood
15	chr1:95476800-95479200	Weak transcription	Liver	Liver
16	chr1:95477600-95478600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr1:95477600-95480000	Enhancers	HSMM	muscle
18	chr1:95477800-95478200	Weak transcription	NHLF	lung
19	chr1:95477800-95478600	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr1:95477800-95479600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr1:95477800-95480000	Enhancers	Muscle Satellite Cultured Cells	--
22	chr1:95477800-95480000	Enhancers	Osteobl	bone
23	chr1:95477800-95480200	Enhancers	NHDF-Ad	bronchial
24	chr1:95478000-95478600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr1:95478000-95478600	Enhancers	HSMMtube	muscle
26	chr1:95478000-95479800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr1:95478000-95480000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
28	chr1:95478000-95480200	Enhancers	Ovary	ovary
29	chr1:95478000-95480200	Enhancers	HUVEC	blood vessel

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