The 2.0 version of rSNPBase

Variant report

Variant rs17112852
Chromosome Location chr1:95461433-95461434
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:44 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:95429000-95467600 Weak transcription Stomach Smooth Muscle stomach
2 chr1:95447000-95490800 Weak transcription Fetal Intestine Large intestine
3 chr1:95448200-95491000 Weak transcription Primary B cells from cord blood blood
4 chr1:95452600-95467000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
5 chr1:95452800-95468400 Weak transcription Fetal Intestine Small intestine
6 chr1:95453200-95463200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
7 chr1:95453600-95468400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
8 chr1:95454000-95467600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
9 chr1:95455200-95473600 Weak transcription Gastric stomach
10 chr1:95455400-95467800 Weak transcription Brain Substantia Nigra brain
11 chr1:95455600-95465000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
12 chr1:95455600-95467600 Weak transcription Brain Hippocampus Middle brain
13 chr1:95455800-95463400 Weak transcription HSMMtube muscle
14 chr1:95455800-95463600 Weak transcription ES-I3 Cell Line embryonic stem cell
15 chr1:95455800-95467800 Weak transcription Sigmoid Colon Sigmoid Colon
16 chr1:95456200-95465000 Weak transcription Fetal Muscle Leg muscle
17 chr1:95457000-95468600 Weak transcription Pancreatic Islets Pancreatic Islet
18 chr1:95457800-95461800 Enhancers HUVEC blood vessel
19 chr1:95459400-95465800 Weak transcription Esophagus oesophagus
20 chr1:95459400-95467600 Weak transcription Ovary ovary
21 chr1:95459600-95473000 Weak transcription Aorta Aorta
22 chr1:95459600-95473000 Weak transcription Pancreas Pancrea
23 chr1:95459800-95461600 Enhancers Primary T helper naive cells fromperipheralblood blood
24 chr1:95459800-95465000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
25 chr1:95460200-95462400 Weak transcription Fetal Lung lung
26 chr1:95460200-95467600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
27 chr1:95460400-95467600 Weak transcription Right Atrium heart
28 chr1:95460400-95467600 Weak transcription Right Ventricle heart
29 chr1:95460400-95467600 Weak transcription Skeletal Muscle Male skeletal muscle
30 chr1:95460400-95467800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
31 chr1:95460400-95478400 Weak transcription Left Ventricle heart
32 chr1:95460600-95465400 Weak transcription Breast Myoepithelial Primary Cells Breast
33 chr1:95460600-95468000 Weak transcription Adipose Nuclei Adipose
34 chr1:95460800-95461600 Enhancers Fetal Kidney kidney
35 chr1:95461000-95461600 Enhancers Fetal Adrenal Gland Adrenal Gland
36 chr1:95461000-95461800 Enhancers Osteobl bone
37 chr1:95461000-95462000 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
38 chr1:95461200-95461800 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
39 chr1:95461200-95469600 Enhancers Cortex derived primary cultured neurospheres brain
40 chr1:95461400-95461800 Enhancers Muscle Satellite Cultured Cells --
41 chr1:95461400-95462000 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
42 chr1:95461400-95462000 Enhancers Spleen Spleen
43 chr1:95461400-95462000 Enhancers NHLF lung
44 chr1:95461400-95468000 Weak transcription NH-A brain

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Last update: Aug 31, 2015