Variant report

Variant	rs12203148
Chromosome Location	chr6:76432565-76432566
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:76431586..76433985-chr6:76438066..76440225,2	MCF-7	breast:
2	chr6:76424414..76426953-chr6:76430333..76433018,2	MCF-7	breast:
3	chr6:76405218..76407618-chr6:76430939..76433858,2	MCF-7	breast:

Extended variants
information (count: 119 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs1045758	0.88[ASN][1000 genomes]
rs10806047	0.88[ASN][1000 genomes]
rs10806051	0.88[ASN][1000 genomes]
rs10943277	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10943278	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10943279	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10943287	0.88[ASN][1000 genomes]
rs10943294	0.88[ASN][1000 genomes]
rs10943295	0.88[ASN][1000 genomes]
rs12153964	0.88[ASN][1000 genomes]
rs12154202	0.88[ASN][1000 genomes]
rs12192223	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12196105	0.88[ASN][1000 genomes]
rs12197993	0.88[ASN][1000 genomes]
rs12202491	0.88[ASN][1000 genomes]
rs12203091	0.88[ASN][1000 genomes]
rs12203461	0.88[ASN][1000 genomes]
rs12205818	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12208368	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12210386	0.88[ASN][1000 genomes]
rs12210963	0.88[ASN][1000 genomes]
rs12211167	0.88[ASN][1000 genomes]
rs12211173	0.88[ASN][1000 genomes]
rs12211735	0.88[ASN][1000 genomes]
rs12212171	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12212604	0.84[ASN][1000 genomes]
rs12213795	0.88[ASN][1000 genomes]
rs12214738	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12215914	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12215965	0.88[ASN][1000 genomes]
rs12216518	0.88[ASN][1000 genomes]
rs13193694	0.88[ASN][1000 genomes]
rs13194557	0.88[ASN][1000 genomes]
rs13196164	0.88[ASN][1000 genomes]
rs13204537	0.88[ASN][1000 genomes]
rs13205073	0.88[ASN][1000 genomes]
rs13211391	0.88[ASN][1000 genomes]
rs13216921	0.88[ASN][1000 genomes]
rs13220416	0.81[ASN][1000 genomes]
rs17792773	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1923586	0.88[ASN][1000 genomes]
rs2208798	0.88[ASN][1000 genomes]
rs28480026	0.92[ASN][1000 genomes]
rs33997653	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34636573	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35973114	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3778008	0.88[ASN][1000 genomes]
rs3798430	0.88[ASN][1000 genomes]
rs3798437	0.88[ASN][1000 genomes]
rs3798440	0.88[ASN][1000 genomes]
rs3798441	0.88[ASN][1000 genomes]
rs3798442	0.88[ASN][1000 genomes]
rs3798455	0.88[ASN][1000 genomes]
rs57268793	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58570618	1.00[ASN][1000 genomes]
rs67016585	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71561434	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs71561437	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs71561438	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72886845	1.00[ASN][1000 genomes]
rs9341531	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9341534	0.88[ASN][1000 genomes]
rs9341535	0.84[ASN][1000 genomes]
rs9341540	0.88[ASN][1000 genomes]
rs9343315	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9343320	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9343326	0.88[ASN][1000 genomes]
rs9350596	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9350602	0.88[ASN][1000 genomes]
rs9352228	1.00[ASN][1000 genomes]
rs9352229	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9352231	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9352232	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9352241	0.88[ASN][1000 genomes]
rs9352244	0.88[ASN][1000 genomes]
rs9352245	0.88[ASN][1000 genomes]
rs9359133	1.00[ASN][1000 genomes]
rs9359135	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9359144	0.88[ASN][1000 genomes]
rs9359148	0.88[ASN][1000 genomes]
rs9360926	0.92[ASN][1000 genomes]
rs9360930	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9360932	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9360939	0.81[ASN][1000 genomes]
rs9360942	0.88[ASN][1000 genomes]
rs9360946	0.88[ASN][1000 genomes]
rs9360947	0.88[ASN][1000 genomes]
rs9360948	0.88[ASN][1000 genomes]
rs9360950	0.88[ASN][1000 genomes]
rs9360952	0.88[ASN][1000 genomes]
rs9360956	0.88[ASN][1000 genomes]
rs9447540	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:27 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027915	chr6:75893542-76510113	Active TSS Enhancers Strong transcription Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv538311	chr6:75893542-76510113	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
3	nsv1022428	chr6:76023118-76575620	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	48 gene(s)	inside rSNPs	diseases
4	nsv538312	chr6:76023118-76575620	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	48 gene(s)	inside rSNPs	diseases
5	nsv1032245	chr6:76045537-76545703	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	47 gene(s)	inside rSNPs	diseases
6	nsv538313	chr6:76045537-76545703	Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	47 gene(s)	inside rSNPs	diseases
7	nsv1019328	chr6:76154751-76604197	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
8	nsv538314	chr6:76154751-76604197	Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
9	nsv1023331	chr6:76238459-76482117	Strong transcription ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
10	nsv538315	chr6:76238459-76482117	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
11	nsv1017542	chr6:76238459-76537447	Strong transcription Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
12	nsv1031745	chr6:76257913-76493355	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
13	nsv538316	chr6:76257913-76493355	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
14	nsv533100	chr6:76257914-76493354	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
15	nsv1023749	chr6:76287578-76482117	Weak transcription Flanking Active TSS Genic enhancers Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
16	nsv538317	chr6:76287578-76482117	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
17	nsv1021090	chr6:76306100-76759397	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
18	nsv538318	chr6:76306100-76759397	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
19	nsv886184	chr6:76320846-76462711	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
20	nsv886185	chr6:76320846-76498109	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
21	nsv886186	chr6:76328955-76469115	Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
22	nsv1032961	chr6:76343575-76788852	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
23	nsv932201	chr6:76365548-77219650	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
24	nsv886187	chr6:76408950-76469115	Strong transcription Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
25	nsv1028340	chr6:76410921-76960225	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
26	nsv538319	chr6:76410921-76960225	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
27	nsv886188	chr6:76411843-76469115	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:76420600-76432800	Weak transcription	NHLF	lung
2	chr6:76422600-76433800	Weak transcription	Brain Substantia Nigra	brain
3	chr6:76422800-76433200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:76424600-76433400	Weak transcription	Left Ventricle	heart
5	chr6:76425000-76435800	Weak transcription	Ovary	ovary
6	chr6:76425200-76433400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr6:76425400-76432800	Weak transcription	Fetal Muscle Trunk	muscle
8	chr6:76425400-76437200	Weak transcription	Fetal Intestine Large	intestine
9	chr6:76425400-76446200	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr6:76425800-76433200	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr6:76426200-76433000	Weak transcription	Adipose Nuclei	Adipose
12	chr6:76426400-76434000	Weak transcription	Fetal Lung	lung
13	chr6:76429000-76445400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links