Variant report

Variant	rs12654606
Chromosome Location	chr5:124243590-124243591
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:124239568..124241634-chr5:124242777..124244777,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10038794	0.85[EUR][1000 genomes]
rs10041713	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10051446	0.83[EUR][1000 genomes]
rs10055828	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10066786	0.85[EUR][1000 genomes]
rs10070612	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10077638	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10078386	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1026010	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10793807	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11241777	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11743521	0.88[AMR][1000 genomes]
rs11743554	0.88[AMR][1000 genomes]
rs11953197	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12652881	0.91[AMR][1000 genomes]
rs12652885	0.91[AMR][1000 genomes]
rs12653706	0.84[EUR][1000 genomes]
rs12654010	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12654041	0.88[AMR][1000 genomes]
rs12654479	0.88[AMR][1000 genomes]
rs12654486	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12654613	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12655869	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12655887	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12656060	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12656225	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12657832	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12658154	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13359971	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28375332	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs36041674	0.88[AMR][1000 genomes]
rs56110557	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6875370	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6895765	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6898265	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73782503	0.88[AMR][1000 genomes]
rs9327340	0.88[AMR][1000 genomes]

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124237600-124246800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr5:124238400-124246200	Weak transcription	Aorta	Aorta
3	chr5:124240600-124245800	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr5:124240800-124244400	Enhancers	Fetal Heart	heart
5	chr5:124240800-124245400	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr5:124241400-124245600	Enhancers	Brain Germinal Matrix	brain
7	chr5:124241600-124246000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr5:124241800-124245400	Enhancers	Adipose Nuclei	Adipose
9	chr5:124241800-124246800	Enhancers	Liver	Liver
10	chr5:124241800-124246800	Enhancers	Fetal Lung	lung
11	chr5:124242000-124243800	Enhancers	Fetal Muscle Trunk	muscle
12	chr5:124242000-124243800	Enhancers	Small Intestine	intestine
13	chr5:124242000-124245000	Enhancers	Stomach Smooth Muscle	stomach
14	chr5:124242000-124246000	Enhancers	Fetal Intestine Small	intestine
15	chr5:124242000-124246200	Enhancers	Fetal Intestine Large	intestine
16	chr5:124242000-124246600	Enhancers	Ovary	ovary
17	chr5:124242200-124243800	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr5:124242600-124243600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr5:124242600-124248000	Weak transcription	Primary B cells from peripheral blood	blood
20	chr5:124242800-124243600	Enhancers	Brain Hippocampus Middle	brain
21	chr5:124242800-124244200	Weak transcription	Fetal Kidney	kidney
22	chr5:124242800-124244400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr5:124242800-124244400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr5:124242800-124244400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr5:124242800-124244400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr5:124242800-124244400	Enhancers	Rectal Mucosa Donor 29	rectum
27	chr5:124242800-124244400	Weak transcription	A549	lung
28	chr5:124242800-124244400	Weak transcription	GM12878-XiMat	blood
29	chr5:124242800-124244600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr5:124242800-124247400	Enhancers	Brain Anterior Caudate	brain
31	chr5:124242800-124248600	Enhancers	Brain Substantia Nigra	brain
32	chr5:124243000-124244000	Weak transcription	HUVEC	blood vessel
33	chr5:124243000-124244200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr5:124243000-124244200	Weak transcription	HepG2	liver
35	chr5:124243000-124244200	Weak transcription	HSMM	muscle
36	chr5:124243000-124244200	Weak transcription	NHDF-Ad	bronchial
37	chr5:124243000-124244200	Weak transcription	Osteobl	bone
38	chr5:124243000-124244400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr5:124243000-124244400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr5:124243000-124244400	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr5:124243000-124244400	Weak transcription	HUES64 Cell Line	embryonic stem cell
42	chr5:124243000-124244400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr5:124243000-124244400	Weak transcription	Right Ventricle	heart
44	chr5:124243000-124244400	Weak transcription	HSMMtube	muscle
45	chr5:124243000-124244400	Weak transcription	NH-A	brain
46	chr5:124243000-124244600	Weak transcription	Fetal Brain Male	brain
47	chr5:124243000-124244800	Weak transcription	Stomach Mucosa	stomach
48	chr5:124243000-124248600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr5:124243000-124248600	Weak transcription	Primary B cells from cord blood	blood
50	chr5:124243200-124243600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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