Variant report

Variant	rs10066786
Chromosome Location	chr5:124239088-124239089
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10038794	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10041713	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10041724	0.85[ASN][1000 genomes]
rs10051446	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10055828	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10058365	0.93[ASN][1000 genomes]
rs10070612	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10077638	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10078386	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1026010	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10463783	0.88[EUR][1000 genomes]
rs10478645	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10793807	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11241775	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11241776	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11241777	0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11241779	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11743521	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11743554	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11951671	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11953197	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11958289	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12652556	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12652881	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12652885	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12653706	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12654010	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12654041	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12654479	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12654486	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12654606	0.85[EUR][1000 genomes]
rs12654613	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12655869	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12655887	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12656060	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12656194	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12656225	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12657832	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12658154	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13359971	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28375332	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35862376	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs36041674	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56110557	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59020249	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62370848	0.87[ASN][1000 genomes]
rs6869863	0.86[ASN][1000 genomes]
rs6875370	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6895658	0.86[ASN][1000 genomes]
rs6895765	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6898265	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73782503	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9327340	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124223200-124242200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:124235200-124242000	Weak transcription	NHDF-Ad	bronchial
3	chr5:124236600-124240000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr5:124236800-124240200	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr5:124237000-124243400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr5:124237200-124240000	Enhancers	Dnd41	blood
7	chr5:124237400-124239400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr5:124237400-124239600	Enhancers	Primary B cells from cord blood	blood
9	chr5:124237600-124239400	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr5:124237600-124239600	Enhancers	Primary B cells from peripheral blood	blood
11	chr5:124237600-124243000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr5:124237600-124246800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr5:124237800-124239800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr5:124238200-124241600	Weak transcription	Colon Smooth Muscle	Colon
15	chr5:124238200-124241600	Weak transcription	HSMM	muscle
16	chr5:124238200-124241800	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr5:124238200-124241800	Weak transcription	Hela-S3	cervix
18	chr5:124238200-124242000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr5:124238200-124242200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr5:124238400-124239600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr5:124238400-124240800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr5:124238400-124240800	Weak transcription	Brain Anterior Caudate	brain
23	chr5:124238400-124240800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr5:124238400-124241400	Weak transcription	Brain Germinal Matrix	brain
25	chr5:124238400-124241600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr5:124238400-124241600	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr5:124238400-124241600	Weak transcription	Fetal Stomach	stomach
28	chr5:124238400-124241800	Weak transcription	Adipose Nuclei	Adipose
29	chr5:124238400-124242000	Weak transcription	Fetal Intestine Small	intestine
30	chr5:124238400-124242000	Weak transcription	Fetal Thymus	thymus
31	chr5:124238400-124242000	Weak transcription	Left Ventricle	heart
32	chr5:124238400-124242000	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr5:124238400-124242000	Weak transcription	Right Ventricle	heart
34	chr5:124238400-124242000	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr5:124238400-124242000	Weak transcription	HUVEC	blood vessel
36	chr5:124238400-124242000	Weak transcription	NHLF	lung
37	chr5:124238400-124242200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr5:124238400-124242200	Weak transcription	Esophagus	oesophagus
39	chr5:124238400-124242200	Weak transcription	Pancreas	Pancrea
40	chr5:124238400-124242200	Weak transcription	Psoas Muscle	Psoas
41	chr5:124238400-124242200	Weak transcription	Right Atrium	heart
42	chr5:124238400-124246200	Weak transcription	Aorta	Aorta
43	chr5:124238600-124239400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
44	chr5:124238600-124239400	Enhancers	Monocytes-CD14+_RO01746	blood
45	chr5:124238600-124240600	Weak transcription	Fetal Kidney	kidney
46	chr5:124238600-124240600	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr5:124238600-124240800	Weak transcription	Brain Hippocampus Middle	brain
48	chr5:124238600-124240800	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr5:124238600-124241000	Weak transcription	Brain Angular Gyrus	brain
50	chr5:124238600-124241200	Weak transcription	Brain Cingulate Gyrus	brain

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