Variant report

Variant	rs11241776
Chromosome Location	chr5:124245469-124245470
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10038794	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10041713	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10041724	0.87[ASN][1000 genomes]
rs10051446	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10055828	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10058365	0.93[ASN][1000 genomes]
rs10061263	0.80[ASN][1000 genomes]
rs10066786	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10070612	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10073890	0.80[ASN][1000 genomes]
rs10074013	0.80[ASN][1000 genomes]
rs10077638	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10078386	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1026010	0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10463783	0.83[EUR][1000 genomes]
rs10478645	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10793807	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11241775	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11241777	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11241779	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11743521	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11743554	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11951671	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11953197	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11958289	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12109265	0.81[ASN][1000 genomes]
rs12652556	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12652881	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12652885	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12653706	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12654010	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12654041	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12654479	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12654486	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12654613	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12655869	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12655887	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12656060	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12656194	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12656225	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12657832	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12658154	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13359971	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17152193	0.81[ASN][1000 genomes]
rs2028854	0.80[ASN][1000 genomes]
rs28375332	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35862376	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs36041674	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4240384	0.80[ASN][1000 genomes]
rs4279337	0.80[ASN][1000 genomes]
rs4311414	0.80[ASN][1000 genomes]
rs4331894	0.80[ASN][1000 genomes]
rs4836131	0.80[ASN][1000 genomes]
rs56110557	0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59020249	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62370848	0.88[ASN][1000 genomes]
rs6869863	0.88[ASN][1000 genomes]
rs6875187	0.80[ASN][1000 genomes]
rs6875370	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6875763	0.80[ASN][1000 genomes]
rs6895658	0.88[ASN][1000 genomes]
rs6895765	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6898265	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73782503	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7732618	0.80[ASN][1000 genomes]
rs9327340	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9968605	0.80[ASN][1000 genomes]

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124237600-124246800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr5:124238400-124246200	Weak transcription	Aorta	Aorta
3	chr5:124240600-124245800	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr5:124241400-124245600	Enhancers	Brain Germinal Matrix	brain
5	chr5:124241600-124246000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr5:124241800-124246800	Enhancers	Liver	Liver
7	chr5:124241800-124246800	Enhancers	Fetal Lung	lung
8	chr5:124242000-124246000	Enhancers	Fetal Intestine Small	intestine
9	chr5:124242000-124246200	Enhancers	Fetal Intestine Large	intestine
10	chr5:124242000-124246600	Enhancers	Ovary	ovary
11	chr5:124242600-124248000	Weak transcription	Primary B cells from peripheral blood	blood
12	chr5:124242800-124247400	Enhancers	Brain Anterior Caudate	brain
13	chr5:124242800-124248600	Enhancers	Brain Substantia Nigra	brain
14	chr5:124243000-124248600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr5:124243000-124248600	Weak transcription	Primary B cells from cord blood	blood
16	chr5:124243200-124246200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr5:124243200-124246400	Weak transcription	Psoas Muscle	Psoas
18	chr5:124243200-124246600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr5:124243800-124245600	Weak transcription	Small Intestine	intestine
20	chr5:124244000-124245800	Enhancers	HUVEC	blood vessel
21	chr5:124244000-124247000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr5:124244000-124247400	Enhancers	Brain Hippocampus Middle	brain
23	chr5:124244200-124245800	Enhancers	Dnd41	blood
24	chr5:124244400-124245600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr5:124244400-124245600	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr5:124244400-124245800	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr5:124244400-124245800	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr5:124244400-124245800	Enhancers	Fetal Stomach	stomach
29	chr5:124244400-124245800	Enhancers	Skeletal Muscle Male	skeletal muscle
30	chr5:124244400-124246000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr5:124244400-124246600	Enhancers	Fetal Muscle Leg	muscle
32	chr5:124244400-124246600	Enhancers	Sigmoid Colon	Sigmoid Colon
33	chr5:124244400-124246800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr5:124244400-124246800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr5:124244400-124246800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr5:124244400-124246800	Enhancers	Brain Cingulate Gyrus	brain
37	chr5:124244400-124247000	Enhancers	Skeletal Muscle Female	skeletal muscle
38	chr5:124244600-124245600	Enhancers	Brain Inferior Temporal Lobe	brain
39	chr5:124244600-124245600	Enhancers	Duodenum Mucosa	Duodenum
40	chr5:124244600-124247000	Enhancers	Brain Angular Gyrus	brain
41	chr5:124244800-124245600	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr5:124244800-124245800	Weak transcription	Right Atrium	heart
43	chr5:124244800-124246400	Weak transcription	Pancreas	Pancrea
44	chr5:124244800-124246600	Enhancers	Stomach Mucosa	stomach
45	chr5:124244800-124246800	Enhancers	iPS-18 Cell Line	embryonic stem cell
46	chr5:124244800-124247200	Enhancers	Fetal Heart	heart
47	chr5:124244800-124248800	Weak transcription	Left Ventricle	heart
48	chr5:124245000-124246600	Weak transcription	Fetal Brain Male	brain
49	chr5:124245200-124246200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr5:124245200-124247200	Weak transcription	Primary monocytes fromperipheralblood	blood

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