Variant report

Variant	rs10041724
Chromosome Location	chr5:124273520-124273521
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10038794	0.82[ASN][1000 genomes]
rs10041713	0.87[ASN][1000 genomes]
rs10044837	0.85[ASN][1000 genomes]
rs10051446	0.82[ASN][1000 genomes]
rs10055828	0.87[ASN][1000 genomes]
rs10057528	0.88[ASN][1000 genomes]
rs10058365	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10060023	0.85[ASN][1000 genomes]
rs10061263	0.87[ASN][1000 genomes]
rs10066786	0.85[ASN][1000 genomes]
rs10070612	0.87[ASN][1000 genomes]
rs10073890	0.87[ASN][1000 genomes]
rs10074013	0.87[ASN][1000 genomes]
rs10077638	0.84[ASN][1000 genomes]
rs10078386	0.90[CHB][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs10079602	0.85[ASN][1000 genomes]
rs1026010	0.88[ASN][1000 genomes]
rs1031207	0.86[ASN][1000 genomes]
rs10793807	0.86[ASN][1000 genomes]
rs11241776	0.87[ASN][1000 genomes]
rs11241777	0.82[ASN][1000 genomes]
rs11241779	0.97[ASN][1000 genomes]
rs11743521	0.95[ASN][1000 genomes]
rs11743554	0.93[ASN][1000 genomes]
rs11951671	0.97[ASN][1000 genomes]
rs11953197	0.87[ASN][1000 genomes]
rs11958289	0.96[ASN][1000 genomes]
rs12109265	0.88[ASN][1000 genomes]
rs12652881	0.88[ASN][1000 genomes]
rs12652885	0.88[ASN][1000 genomes]
rs12653706	0.87[ASN][1000 genomes]
rs12654010	0.87[ASN][1000 genomes]
rs12654041	0.87[ASN][1000 genomes]
rs12654479	0.87[ASN][1000 genomes]
rs12654486	0.87[ASN][1000 genomes]
rs12654613	0.85[ASN][1000 genomes]
rs12655869	0.87[ASN][1000 genomes]
rs12655887	0.87[ASN][1000 genomes]
rs12656060	0.87[ASN][1000 genomes]
rs12656225	0.87[ASN][1000 genomes]
rs12657832	0.87[ASN][1000 genomes]
rs12658154	0.87[ASN][1000 genomes]
rs13359971	0.87[ASN][1000 genomes]
rs1374130	0.87[ASN][1000 genomes]
rs17152193	0.86[ASN][1000 genomes]
rs2028854	0.87[ASN][1000 genomes]
rs28375332	0.87[ASN][1000 genomes]
rs35862376	0.96[ASN][1000 genomes]
rs36041674	0.95[ASN][1000 genomes]
rs4240384	0.88[ASN][1000 genomes]
rs4279337	0.87[ASN][1000 genomes]
rs4311414	0.88[ASN][1000 genomes]
rs4331894	0.88[ASN][1000 genomes]
rs4540171	0.85[ASN][1000 genomes]
rs4836131	0.87[ASN][1000 genomes]
rs56110557	0.87[ASN][1000 genomes]
rs62370848	0.81[EUR][1000 genomes]
rs6861021	0.81[ASN][1000 genomes]
rs6861089	0.80[ASN][1000 genomes]
rs6863192	0.84[ASN][1000 genomes]
rs6869863	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6875187	0.88[ASN][1000 genomes]
rs6875370	0.87[ASN][1000 genomes]
rs6875763	0.88[ASN][1000 genomes]
rs6876036	0.87[ASN][1000 genomes]
rs6895658	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6895765	0.81[CHB][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs6898265	1.00[CHB][hapmap];0.86[JPT][hapmap];0.88[ASN][1000 genomes]
rs73782503	0.91[ASN][1000 genomes]
rs7732618	0.88[ASN][1000 genomes]
rs9327340	0.91[ASN][1000 genomes]
rs9968605	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882822	chr5:124250018-124449375	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830474	chr5:124263628-124431299	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10041724	ZNF608	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124270400-124276000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr5:124271000-124275800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr5:124271800-124275400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr5:124272000-124274800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr5:124272200-124274200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr5:124272200-124284000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr5:124272600-124274200	Weak transcription	Dnd41	blood

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