Variant report

Variant	rs12656060
Chromosome Location	chr5:124247974-124247975
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10038794	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10041713	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10041724	0.87[ASN][1000 genomes]
rs10051446	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10055828	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10058365	0.93[ASN][1000 genomes]
rs10061263	0.80[ASN][1000 genomes]
rs10066786	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10070612	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10073890	0.80[ASN][1000 genomes]
rs10074013	0.80[ASN][1000 genomes]
rs10077638	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10078386	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1026010	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10463783	0.87[EUR][1000 genomes]
rs10478645	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10793807	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11241775	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11241776	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11241777	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11241779	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11743521	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11743554	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11951671	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11953197	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11958289	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12109265	0.81[ASN][1000 genomes]
rs12652556	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12652881	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12652885	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12653706	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12654010	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12654041	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12654479	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12654486	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12654606	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12654613	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12655869	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12655887	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12656194	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12656225	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12657832	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12658154	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13359971	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17152193	0.81[ASN][1000 genomes]
rs2028854	0.80[ASN][1000 genomes]
rs28375332	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35862376	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs36041674	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4240384	0.80[ASN][1000 genomes]
rs4279337	0.80[ASN][1000 genomes]
rs4311414	0.80[ASN][1000 genomes]
rs4331894	0.80[ASN][1000 genomes]
rs4836131	0.80[ASN][1000 genomes]
rs56110557	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59020249	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62370848	0.88[ASN][1000 genomes]
rs6869863	0.88[ASN][1000 genomes]
rs6875187	0.80[ASN][1000 genomes]
rs6875370	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6875763	0.80[ASN][1000 genomes]
rs6895658	0.88[ASN][1000 genomes]
rs6895765	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6898265	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73782503	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7732618	0.80[ASN][1000 genomes]
rs9327340	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9968605	0.80[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12656060	ZNF608	cis	lymphoblastoid	seeQTL

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124242600-124248000	Weak transcription	Primary B cells from peripheral blood	blood
2	chr5:124242800-124248600	Enhancers	Brain Substantia Nigra	brain
3	chr5:124243000-124248600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr5:124243000-124248600	Weak transcription	Primary B cells from cord blood	blood
5	chr5:124244800-124248800	Weak transcription	Left Ventricle	heart
6	chr5:124245400-124249000	Enhancers	GM12878-XiMat	blood
7	chr5:124245800-124248400	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr5:124245800-124248400	Weak transcription	Dnd41	blood
9	chr5:124245800-124248600	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr5:124246000-124254200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr5:124246600-124248800	Weak transcription	Ovary	ovary
12	chr5:124246800-124248200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr5:124246800-124248200	Weak transcription	Psoas Muscle	Psoas
14	chr5:124247000-124249600	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr5:124247200-124249400	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr5:124247400-124248000	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr5:124247400-124248600	Weak transcription	Brain Hippocampus Middle	brain
18	chr5:124247600-124248400	Weak transcription	Skeletal Muscle Female	skeletal muscle

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