Variant report

Variant	rs11241779
Chromosome Location	chr5:124282754-124282755
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:124282737..124284807-chr5:124288321..124290528,2	K562	blood:

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs10038794	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10041713	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10041724	0.97[ASN][1000 genomes]
rs10044837	0.88[ASN][1000 genomes]
rs10051446	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10055285	0.81[ASN][1000 genomes]
rs10055828	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10057528	0.89[ASN][1000 genomes]
rs10057766	0.81[ASN][1000 genomes]
rs10058365	0.82[ASN][1000 genomes]
rs10060023	0.88[ASN][1000 genomes]
rs10061263	0.90[ASN][1000 genomes]
rs10066786	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10070612	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10073890	0.90[ASN][1000 genomes]
rs10074013	0.90[ASN][1000 genomes]
rs10077638	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10078386	1.00[CEU][hapmap];0.95[CHB][hapmap];0.83[JPT][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10079602	0.88[ASN][1000 genomes]
rs1026010	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1031207	0.89[ASN][1000 genomes]
rs10463783	0.85[EUR][1000 genomes]
rs10478645	0.89[EUR][1000 genomes]
rs10793807	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11241775	0.89[EUR][1000 genomes]
rs11241776	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11241777	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11743521	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11743554	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11951671	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11953197	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11958289	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12109265	0.92[ASN][1000 genomes]
rs12652556	0.89[EUR][1000 genomes]
rs12652881	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12652885	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12653706	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12654010	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12654041	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12654479	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12654486	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12654613	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12655869	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12655887	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12656060	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12656194	0.89[EUR][1000 genomes]
rs12656225	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12657832	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12658154	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13359971	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1374130	0.90[ASN][1000 genomes]
rs17152193	0.89[ASN][1000 genomes]
rs2028854	0.90[ASN][1000 genomes]
rs28375332	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35862376	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs36041674	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4240384	0.91[ASN][1000 genomes]
rs4240385	0.81[ASN][1000 genomes]
rs4279337	0.90[ASN][1000 genomes]
rs4311414	0.91[ASN][1000 genomes]
rs4331894	0.91[ASN][1000 genomes]
rs4357030	0.83[ASN][1000 genomes]
rs4540171	0.88[ASN][1000 genomes]
rs4836131	0.90[ASN][1000 genomes]
rs56110557	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59020249	0.87[EUR][1000 genomes]
rs6861021	0.83[ASN][1000 genomes]
rs6861089	0.83[ASN][1000 genomes]
rs6863192	0.87[ASN][1000 genomes]
rs6869863	0.98[ASN][1000 genomes]
rs6872411	0.82[ASN][1000 genomes]
rs6875187	0.91[ASN][1000 genomes]
rs6875370	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6875763	0.91[ASN][1000 genomes]
rs6876036	0.90[ASN][1000 genomes]
rs6895658	0.98[ASN][1000 genomes]
rs6895765	1.00[CEU][hapmap];0.87[CHB][hapmap];0.84[JPT][hapmap];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6898265	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73782503	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7732618	0.91[ASN][1000 genomes]
rs9327340	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9968605	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882822	chr5:124250018-124449375	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830474	chr5:124263628-124431299	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124272200-124284000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:124279200-124283200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr5:124279200-124283600	Weak transcription	Dnd41	blood

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