Variant report

Variant	rs73782503
Chromosome Location	chr5:124260233-124260234
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10038794	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10041713	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10041724	0.91[ASN][1000 genomes]
rs10044837	0.81[ASN][1000 genomes]
rs10051446	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10055828	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10057528	0.82[ASN][1000 genomes]
rs10058365	0.89[ASN][1000 genomes]
rs10060023	0.82[ASN][1000 genomes]
rs10061263	0.83[ASN][1000 genomes]
rs10066786	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10070612	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10073890	0.83[ASN][1000 genomes]
rs10074013	0.83[ASN][1000 genomes]
rs10077638	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10078386	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10079602	0.82[ASN][1000 genomes]
rs1026010	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1031207	0.83[ASN][1000 genomes]
rs10463783	0.85[EUR][1000 genomes]
rs10478645	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10793807	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11241775	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11241776	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11241777	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11241779	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11743521	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11743554	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11951671	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11953197	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11958289	0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12109265	0.85[ASN][1000 genomes]
rs12652556	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12652881	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12652885	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12653706	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12654010	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12654041	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12654479	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12654486	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12654606	0.88[AMR][1000 genomes]
rs12654613	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12655869	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12655887	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12656060	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12656194	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12656225	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12657832	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12658154	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13359971	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1374130	0.84[ASN][1000 genomes]
rs17152193	0.83[ASN][1000 genomes]
rs2028854	0.83[ASN][1000 genomes]
rs28375332	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35862376	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs36041674	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4240384	0.85[ASN][1000 genomes]
rs4279337	0.83[ASN][1000 genomes]
rs4311414	0.85[ASN][1000 genomes]
rs4331894	0.85[ASN][1000 genomes]
rs4540171	0.81[ASN][1000 genomes]
rs4836131	0.83[ASN][1000 genomes]
rs56110557	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59020249	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62370848	0.83[ASN][1000 genomes]
rs6863192	0.81[ASN][1000 genomes]
rs6869863	0.93[ASN][1000 genomes]
rs6875187	0.85[ASN][1000 genomes]
rs6875370	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6875763	0.85[ASN][1000 genomes]
rs6876036	0.84[ASN][1000 genomes]
rs6895658	0.93[ASN][1000 genomes]
rs6895765	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6898265	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7732618	0.85[ASN][1000 genomes]
rs9327340	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9968605	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882822	chr5:124250018-124449375	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124249400-124263200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:124254200-124260400	Enhancers	Brain Cingulate Gyrus	brain
3	chr5:124259000-124263200	Weak transcription	HUVEC	blood vessel
4	chr5:124259200-124270800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr5:124259600-124260800	Weak transcription	GM12878-XiMat	blood
6	chr5:124259600-124270400	Weak transcription	Primary B cells from cord blood	blood
7	chr5:124259800-124263000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr5:124260200-124260400	Weak transcription	Brain Germinal Matrix	brain
9	chr5:124260200-124261400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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