Variant report

Variant	rs12652556
Chromosome Location	chr5:124222713-124222714
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:124177573..124180075-chr5:124221492..124224163,2	K562	blood:
2	chr5:124221826..124223869-chr5:124226503..124229325,2	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10038794	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10041713	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10051446	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10055828	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10058365	0.88[ASN][1000 genomes]
rs10066786	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10070612	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10077638	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10078386	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1026010	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10463783	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10478645	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10793807	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11241775	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11241776	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11241777	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11241779	0.89[EUR][1000 genomes]
rs11743521	0.90[EUR][1000 genomes]
rs11743554	0.90[EUR][1000 genomes]
rs11951671	0.89[EUR][1000 genomes]
rs11953197	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11958289	0.88[EUR][1000 genomes]
rs12652881	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12652885	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12653706	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12654010	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12654041	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12654479	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12654486	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12654613	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12655869	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12655887	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12656060	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12656194	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12656225	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12657832	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12658154	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12658172	0.89[ASN][1000 genomes]
rs13359971	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28375332	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35862376	0.85[EUR][1000 genomes]
rs36041674	0.90[EUR][1000 genomes]
rs56110557	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59020249	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60775983	0.89[ASN][1000 genomes]
rs62370848	0.90[ASN][1000 genomes]
rs6875370	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6895765	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6898265	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73782503	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9327340	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12652556	ZNF608	cis	lymphoblastoid	seeQTL

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124209600-124224800	Weak transcription	Fetal Brain Male	brain
2	chr5:124215800-124224800	Weak transcription	Pancreas	Pancrea
3	chr5:124217600-124223400	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr5:124218400-124223400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr5:124219400-124223800	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr5:124220000-124224000	Weak transcription	Fetal Stomach	stomach
7	chr5:124220200-124223000	Weak transcription	Stomach Mucosa	stomach
8	chr5:124220200-124223400	Weak transcription	Duodenum Mucosa	Duodenum
9	chr5:124220400-124222800	Weak transcription	Liver	Liver
10	chr5:124220600-124223000	Weak transcription	Small Intestine	intestine
11	chr5:124221400-124222800	Weak transcription	Fetal Lung	lung
12	chr5:124222000-124223000	Weak transcription	Psoas Muscle	Psoas
13	chr5:124222200-124227000	Enhancers	Dnd41	blood
14	chr5:124222400-124222800	Weak transcription	Fetal Intestine Small	intestine
15	chr5:124222400-124223000	Weak transcription	Brain Angular Gyrus	brain
16	chr5:124222400-124223400	Enhancers	Fetal Intestine Large	intestine
17	chr5:124222400-124223800	Enhancers	Fetal Kidney	kidney
18	chr5:124222400-124224000	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr5:124222400-124224000	Enhancers	Brain Hippocampus Middle	brain
20	chr5:124222400-124225400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr5:124222600-124223200	Enhancers	Pancreatic Islets	Pancreatic Islet
22	chr5:124222600-124224000	Enhancers	Brain Anterior Caudate	brain
23	chr5:124222600-124224000	Enhancers	Brain Substantia Nigra	brain
24	chr5:124222600-124225600	Enhancers	Cortex derived primary cultured neurospheres	brain

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