Variant report

Variant	rs10058365
Chromosome Location	chr5:124235427-124235428
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10038794	0.98[ASN][1000 genomes]
rs10041713	0.93[ASN][1000 genomes]
rs10041724	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10051446	0.98[ASN][1000 genomes]
rs10055828	0.93[ASN][1000 genomes]
rs10066786	0.93[ASN][1000 genomes]
rs10070612	0.93[ASN][1000 genomes]
rs10077638	0.97[ASN][1000 genomes]
rs10078386	0.93[ASN][1000 genomes]
rs1026010	0.92[ASN][1000 genomes]
rs10463783	0.81[ASN][1000 genomes]
rs10478645	0.92[ASN][1000 genomes]
rs10793807	0.93[ASN][1000 genomes]
rs11241775	0.89[ASN][1000 genomes]
rs11241776	0.93[ASN][1000 genomes]
rs11241777	0.89[ASN][1000 genomes]
rs11241779	0.82[ASN][1000 genomes]
rs11743521	0.85[ASN][1000 genomes]
rs11743554	0.83[ASN][1000 genomes]
rs11951671	0.82[ASN][1000 genomes]
rs11953197	0.93[ASN][1000 genomes]
rs11958289	0.82[ASN][1000 genomes]
rs12652556	0.88[ASN][1000 genomes]
rs12652881	0.92[ASN][1000 genomes]
rs12652885	0.92[ASN][1000 genomes]
rs12653706	0.93[ASN][1000 genomes]
rs12654010	0.93[ASN][1000 genomes]
rs12654041	0.93[ASN][1000 genomes]
rs12654479	0.93[ASN][1000 genomes]
rs12654486	0.93[ASN][1000 genomes]
rs12654613	0.95[ASN][1000 genomes]
rs12655869	0.93[ASN][1000 genomes]
rs12655887	0.93[ASN][1000 genomes]
rs12656060	0.93[ASN][1000 genomes]
rs12656194	0.90[ASN][1000 genomes]
rs12656225	0.93[ASN][1000 genomes]
rs12657832	0.93[ASN][1000 genomes]
rs12658154	0.93[ASN][1000 genomes]
rs12658172	0.80[ASN][1000 genomes]
rs13359971	0.93[ASN][1000 genomes]
rs28375332	0.93[ASN][1000 genomes]
rs35862376	0.82[ASN][1000 genomes]
rs36041674	0.85[ASN][1000 genomes]
rs56110557	0.93[ASN][1000 genomes]
rs59020249	0.92[ASN][1000 genomes]
rs60775983	0.80[ASN][1000 genomes]
rs62370848	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6869863	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6875370	0.93[ASN][1000 genomes]
rs6895658	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6895765	0.93[ASN][1000 genomes]
rs6898265	0.92[ASN][1000 genomes]
rs73782503	0.89[ASN][1000 genomes]
rs9327340	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3324715	chr5:124233278-124235826	ZNF genes & repeats Weak transcription Enhancers	lncRNA	n/a	inside rSNPs	diseases
2	esv3427099	chr5:124233328-124236251	ZNF genes & repeats Weak transcription Enhancers	lncRNA	n/a	inside rSNPs	diseases
3	esv3339088	chr5:124233753-124235801	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10058365	ZNF608	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124223200-124242200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:124225800-124237800	Weak transcription	Fetal Lung	lung
3	chr5:124233400-124237600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr5:124233800-124238000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr5:124234000-124236000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr5:124235200-124242000	Weak transcription	NHDF-Ad	bronchial

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