Variant report

Variant	rs35862376
Chromosome Location	chr5:124278057-124278058
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:124277456..124281279-chr5:124283449..124286238,3	K562	blood:

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs10038794	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10041713	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10041724	0.96[ASN][1000 genomes]
rs10044837	0.87[ASN][1000 genomes]
rs10051446	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10055285	0.81[ASN][1000 genomes]
rs10055828	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10057528	0.88[ASN][1000 genomes]
rs10057766	0.81[ASN][1000 genomes]
rs10058365	0.82[ASN][1000 genomes]
rs10060023	0.88[ASN][1000 genomes]
rs10061263	0.89[ASN][1000 genomes]
rs10066786	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10070612	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10073890	0.89[ASN][1000 genomes]
rs10074013	0.89[ASN][1000 genomes]
rs10077638	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10078386	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10079602	0.88[ASN][1000 genomes]
rs1026010	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1031207	0.89[ASN][1000 genomes]
rs10463783	0.81[EUR][1000 genomes]
rs10478645	0.85[EUR][1000 genomes]
rs10793807	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11241775	0.85[EUR][1000 genomes]
rs11241776	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11241777	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11241779	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11743521	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11743554	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11951671	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11953197	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11958289	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12109265	0.91[ASN][1000 genomes]
rs12652556	0.85[EUR][1000 genomes]
rs12652881	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12652885	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12653706	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12654010	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12654041	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12654479	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12654486	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12654613	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12655869	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12655887	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12656060	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12656194	0.85[EUR][1000 genomes]
rs12656225	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12657832	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12658154	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13359971	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1374130	0.90[ASN][1000 genomes]
rs17152193	0.88[ASN][1000 genomes]
rs2028854	0.89[ASN][1000 genomes]
rs28375332	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs36041674	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4240384	0.90[ASN][1000 genomes]
rs4240385	0.81[ASN][1000 genomes]
rs4279337	0.89[ASN][1000 genomes]
rs4311414	0.90[ASN][1000 genomes]
rs4331894	0.90[ASN][1000 genomes]
rs4357030	0.82[ASN][1000 genomes]
rs4540171	0.87[ASN][1000 genomes]
rs4836131	0.89[ASN][1000 genomes]
rs56110557	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59020249	0.83[EUR][1000 genomes]
rs6861021	0.83[ASN][1000 genomes]
rs6861089	0.83[ASN][1000 genomes]
rs6863192	0.86[ASN][1000 genomes]
rs6869863	0.97[ASN][1000 genomes]
rs6872411	0.81[ASN][1000 genomes]
rs6875187	0.90[ASN][1000 genomes]
rs6875370	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6875763	0.90[ASN][1000 genomes]
rs6876036	0.90[ASN][1000 genomes]
rs6895658	0.97[ASN][1000 genomes]
rs6895765	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6898265	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73782503	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7732618	0.90[ASN][1000 genomes]
rs9327340	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9968605	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882822	chr5:124250018-124449375	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830474	chr5:124263628-124431299	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124272200-124284000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:124276800-124278400	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr5:124277000-124279200	Enhancers	Dnd41	blood
4	chr5:124277400-124278200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr5:124277800-124278400	Enhancers	Placenta Amnion	Placenta Amnion

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links