Variant report

Variant	rs59020249
Chromosome Location	chr5:124230384-124230385
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10038794	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10041713	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10051446	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10055828	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10058365	0.92[ASN][1000 genomes]
rs10066786	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10070612	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10077638	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10078386	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1026010	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10463783	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10478645	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10793807	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11241775	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11241776	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11241777	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11241779	0.87[EUR][1000 genomes]
rs11743521	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11743554	0.88[EUR][1000 genomes]
rs11951671	0.87[EUR][1000 genomes]
rs11953197	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11958289	0.85[EUR][1000 genomes]
rs12652556	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12652881	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12652885	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12653706	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12654010	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12654041	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12654479	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12654486	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12654613	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12655869	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12655887	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12656060	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12656194	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12656225	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12657832	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12658154	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12658172	0.87[ASN][1000 genomes]
rs13359971	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28375332	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35862376	0.83[EUR][1000 genomes]
rs36041674	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56110557	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60775983	0.87[ASN][1000 genomes]
rs62370848	0.95[ASN][1000 genomes]
rs6875370	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6895765	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6898265	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73782503	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9327340	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124223200-124242200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:124225400-124233200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr5:124225600-124230800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr5:124225600-124233000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr5:124225800-124237800	Weak transcription	Fetal Lung	lung
6	chr5:124227000-124230600	Weak transcription	Dnd41	blood
7	chr5:124229000-124233000	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr5:124229600-124230800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr5:124229800-124231600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links