Variant report

Variant	rs11241775
Chromosome Location	chr5:124224444-124224445
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10038794	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10041713	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10051446	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10055828	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10058365	0.89[ASN][1000 genomes]
rs10066786	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10070612	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10077638	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10078386	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1026010	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10463783	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10478645	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10793807	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11241776	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11241777	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11241779	0.89[EUR][1000 genomes]
rs11743521	0.90[EUR][1000 genomes]
rs11743554	0.90[EUR][1000 genomes]
rs11951671	0.89[EUR][1000 genomes]
rs11953197	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11958289	0.88[EUR][1000 genomes]
rs12652556	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12652881	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12652885	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12653706	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12654010	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12654041	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12654479	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12654486	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12654613	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12655869	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12655887	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12656060	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12656194	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12656225	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12657832	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12658154	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12658172	0.89[ASN][1000 genomes]
rs13359971	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28375332	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35862376	0.85[EUR][1000 genomes]
rs36041674	0.90[EUR][1000 genomes]
rs56110557	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59020249	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60775983	0.89[ASN][1000 genomes]
rs62370848	0.92[ASN][1000 genomes]
rs6875370	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6895765	1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6898265	1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73782503	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9327340	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11241775	ZNF608	cis	lymphoblastoid	seeQTL

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124209600-124224800	Weak transcription	Fetal Brain Male	brain
2	chr5:124215800-124224800	Weak transcription	Pancreas	Pancrea
3	chr5:124222200-124227000	Enhancers	Dnd41	blood
4	chr5:124222400-124225400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr5:124222600-124225600	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr5:124222800-124224600	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr5:124222800-124224600	Enhancers	Fetal Lung	lung
8	chr5:124222800-124224800	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr5:124222800-124225200	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr5:124222800-124225800	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr5:124223000-124225400	Enhancers	H1 Cell Line	embryonic stem cell
12	chr5:124223000-124225400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr5:124223000-124225600	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr5:124223000-124225600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr5:124223000-124226200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr5:124223200-124224600	Weak transcription	Small Intestine	intestine
17	chr5:124223200-124224800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr5:124223200-124225800	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr5:124223200-124242200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr5:124223400-124224600	Enhancers	Brain Inferior Temporal Lobe	brain
21	chr5:124223400-124225400	Enhancers	Fetal Heart	heart
22	chr5:124223400-124225600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr5:124223400-124225600	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr5:124223600-124224600	Active TSS	Pancreatic Islets	Pancreatic Islet
25	chr5:124223600-124224600	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr5:124223600-124224800	Weak transcription	Adipose Nuclei	Adipose
27	chr5:124223600-124225200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr5:124223800-124225000	Flanking Active TSS	Fetal Kidney	kidney
29	chr5:124223800-124225400	Enhancers	Brain Germinal Matrix	brain
30	chr5:124223800-124225400	Enhancers	Ovary	ovary
31	chr5:124223800-124225400	Enhancers	Placenta Amnion	Placenta Amnion
32	chr5:124223800-124225600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr5:124224000-124224600	Weak transcription	Brain Angular Gyrus	brain
34	chr5:124224000-124224600	Active TSS	Brain Cingulate Gyrus	brain
35	chr5:124224000-124224600	Enhancers	Fetal Brain Female	brain
36	chr5:124224000-124225000	Enhancers	HSMMtube	muscle
37	chr5:124224000-124225200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr5:124224000-124225200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr5:124224000-124225200	Enhancers	Primary hematopoietic stem cells short term culture	blood
40	chr5:124224000-124225200	Enhancers	Fetal Stomach	stomach
41	chr5:124224000-124225400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
42	chr5:124224000-124225400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr5:124224000-124225400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr5:124224000-124225400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
45	chr5:124224000-124225600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr5:124224000-124225600	Enhancers	Fetal Muscle Leg	muscle
47	chr5:124224200-124224600	Enhancers	Brain Hippocampus Middle	brain
48	chr5:124224200-124224600	Active TSS	Brain Substantia Nigra	brain
49	chr5:124224200-124224600	Enhancers	Duodenum Mucosa	Duodenum
50	chr5:124224200-124224800	Enhancers	Primary hematopoietic stem cells	blood

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