Variant report

Variant	rs12654479
Chromosome Location	chr5:124243030-124243031
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:124239568..124241634-chr5:124242777..124244777,2	K562	blood:

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10038794	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10041713	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10041724	0.87[ASN][1000 genomes]
rs10051446	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10055828	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10058365	0.93[ASN][1000 genomes]
rs10061263	0.80[ASN][1000 genomes]
rs10066786	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10070612	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10073890	0.80[ASN][1000 genomes]
rs10074013	0.80[ASN][1000 genomes]
rs10077638	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10078386	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1026010	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10463783	0.81[EUR][1000 genomes]
rs10478645	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10793807	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11241775	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11241776	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11241777	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11241779	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11743521	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11743554	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11951671	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11953197	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11958289	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12109265	0.81[ASN][1000 genomes]
rs12652556	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12652881	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12652885	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12653706	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12654010	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12654041	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12654486	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12654606	0.88[AMR][1000 genomes]
rs12654613	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12655869	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12655887	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12656060	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12656194	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12656225	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12657832	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12658154	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13359971	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17152193	0.81[ASN][1000 genomes]
rs2028854	0.80[ASN][1000 genomes]
rs28375332	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35862376	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs36041674	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4240384	0.80[ASN][1000 genomes]
rs4279337	0.80[ASN][1000 genomes]
rs4311414	0.80[ASN][1000 genomes]
rs4331894	0.80[ASN][1000 genomes]
rs4836131	0.80[ASN][1000 genomes]
rs56110557	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59020249	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62370848	0.88[ASN][1000 genomes]
rs6869863	0.88[ASN][1000 genomes]
rs6875187	0.80[ASN][1000 genomes]
rs6875370	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6875763	0.80[ASN][1000 genomes]
rs6895658	0.88[ASN][1000 genomes]
rs6895765	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6898265	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73782503	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7732618	0.80[ASN][1000 genomes]
rs9327340	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9968605	0.80[ASN][1000 genomes]

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124237000-124243400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:124237600-124246800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr5:124238400-124246200	Weak transcription	Aorta	Aorta
4	chr5:124240600-124245800	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr5:124240800-124243200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr5:124240800-124244400	Enhancers	Fetal Heart	heart
7	chr5:124240800-124245400	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr5:124241400-124243200	Enhancers	Duodenum Mucosa	Duodenum
9	chr5:124241400-124243400	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr5:124241400-124245600	Enhancers	Brain Germinal Matrix	brain
11	chr5:124241600-124243200	Enhancers	Primary hematopoietic stem cells	blood
12	chr5:124241600-124243200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr5:124241600-124243200	Enhancers	Colon Smooth Muscle	Colon
14	chr5:124241600-124243200	Enhancers	Fetal Muscle Leg	muscle
15	chr5:124241600-124243200	Enhancers	Rectal Smooth Muscle	rectum
16	chr5:124241600-124243400	Enhancers	Fetal Stomach	stomach
17	chr5:124241600-124246000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr5:124241800-124243200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr5:124241800-124245400	Enhancers	Adipose Nuclei	Adipose
20	chr5:124241800-124246800	Enhancers	Liver	Liver
21	chr5:124241800-124246800	Enhancers	Fetal Lung	lung
22	chr5:124242000-124243200	Enhancers	Colonic Mucosa	Colon
23	chr5:124242000-124243200	Enhancers	Fetal Thymus	thymus
24	chr5:124242000-124243200	Enhancers	Left Ventricle	heart
25	chr5:124242000-124243200	Enhancers	Sigmoid Colon	Sigmoid Colon
26	chr5:124242000-124243200	Enhancers	Spleen	Spleen
27	chr5:124242000-124243200	Enhancers	Dnd41	blood
28	chr5:124242000-124243400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr5:124242000-124243400	Enhancers	Primary monocytes fromperipheralblood	blood
30	chr5:124242000-124243800	Enhancers	Fetal Muscle Trunk	muscle
31	chr5:124242000-124243800	Enhancers	Small Intestine	intestine
32	chr5:124242000-124245000	Enhancers	Stomach Smooth Muscle	stomach
33	chr5:124242000-124246000	Enhancers	Fetal Intestine Small	intestine
34	chr5:124242000-124246200	Enhancers	Fetal Intestine Large	intestine
35	chr5:124242000-124246600	Enhancers	Ovary	ovary
36	chr5:124242200-124243200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr5:124242200-124243200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr5:124242200-124243200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr5:124242200-124243200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr5:124242200-124243200	Enhancers	Placenta	Placenta
41	chr5:124242200-124243200	Enhancers	Lung	lung
42	chr5:124242200-124243200	Enhancers	Pancreas	Pancrea
43	chr5:124242200-124243200	Enhancers	Psoas Muscle	Psoas
44	chr5:124242200-124243200	Enhancers	Right Atrium	heart
45	chr5:124242200-124243400	Enhancers	HMEC	breast
46	chr5:124242200-124243800	Weak transcription	Pancreatic Islets	Pancreatic Islet
47	chr5:124242400-124243400	Enhancers	Skeletal Muscle Male	skeletal muscle
48	chr5:124242600-124243200	Enhancers	Brain Inferior Temporal Lobe	brain
49	chr5:124242600-124243200	Enhancers	Skeletal Muscle Female	skeletal muscle
50	chr5:124242600-124243600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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