Variant report

Variant	rs13359971
Chromosome Location	chr5:124241613-124241614
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:124239568..124241634-chr5:124242777..124244777,2	K562	blood:

Extended variants
information (count: 68 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10038794	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10041713	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10041724	0.87[ASN][1000 genomes]
rs10051446	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10055828	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10058365	0.93[ASN][1000 genomes]
rs10061263	0.80[ASN][1000 genomes]
rs10066786	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10070612	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10073890	0.80[ASN][1000 genomes]
rs10074013	0.80[ASN][1000 genomes]
rs10077638	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10078386	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1026010	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10463783	0.88[EUR][1000 genomes]
rs10478645	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10793807	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11241775	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11241776	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11241777	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11241779	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11743521	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11743554	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11951671	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11953197	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11958289	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12109265	0.81[ASN][1000 genomes]
rs12652556	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12652881	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12652885	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12653706	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12654010	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12654041	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12654479	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12654486	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12654606	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12654613	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12655869	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12655887	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12656060	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12656194	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12656225	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12657832	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12658154	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17152193	0.81[ASN][1000 genomes]
rs2028854	0.80[ASN][1000 genomes]
rs28375332	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35862376	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs36041674	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4240384	0.80[ASN][1000 genomes]
rs4279337	0.80[ASN][1000 genomes]
rs4311414	0.80[ASN][1000 genomes]
rs4331894	0.80[ASN][1000 genomes]
rs4836131	0.80[ASN][1000 genomes]
rs56110557	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59020249	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62370848	0.88[ASN][1000 genomes]
rs6869863	0.88[ASN][1000 genomes]
rs6875187	0.80[ASN][1000 genomes]
rs6875370	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6875763	0.80[ASN][1000 genomes]
rs6895658	0.88[ASN][1000 genomes]
rs6895765	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6898265	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73782503	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7732618	0.80[ASN][1000 genomes]
rs9327340	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9968605	0.80[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13359971	ZNF608	cis	lymphoblastoid	seeQTL

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124223200-124242200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:124235200-124242000	Weak transcription	NHDF-Ad	bronchial
3	chr5:124237000-124243400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:124237600-124243000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr5:124237600-124246800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr5:124238200-124241800	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr5:124238200-124241800	Weak transcription	Hela-S3	cervix
8	chr5:124238200-124242000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr5:124238200-124242200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr5:124238400-124241800	Weak transcription	Adipose Nuclei	Adipose
11	chr5:124238400-124242000	Weak transcription	Fetal Intestine Small	intestine
12	chr5:124238400-124242000	Weak transcription	Fetal Thymus	thymus
13	chr5:124238400-124242000	Weak transcription	Left Ventricle	heart
14	chr5:124238400-124242000	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr5:124238400-124242000	Weak transcription	Right Ventricle	heart
16	chr5:124238400-124242000	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr5:124238400-124242000	Weak transcription	HUVEC	blood vessel
18	chr5:124238400-124242000	Weak transcription	NHLF	lung
19	chr5:124238400-124242200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr5:124238400-124242200	Weak transcription	Esophagus	oesophagus
21	chr5:124238400-124242200	Weak transcription	Pancreas	Pancrea
22	chr5:124238400-124242200	Weak transcription	Psoas Muscle	Psoas
23	chr5:124238400-124242200	Weak transcription	Right Atrium	heart
24	chr5:124238400-124246200	Weak transcription	Aorta	Aorta
25	chr5:124238600-124241800	Weak transcription	Fetal Lung	lung
26	chr5:124238600-124241800	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr5:124238600-124242000	Weak transcription	Fetal Intestine Large	intestine
28	chr5:124238600-124242000	Weak transcription	Small Intestine	intestine
29	chr5:124238600-124242000	Weak transcription	Spleen	Spleen
30	chr5:124238600-124242000	Weak transcription	NH-A	brain
31	chr5:124238600-124242200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr5:124238600-124242400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr5:124238800-124241800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr5:124238800-124242000	Weak transcription	Stomach Mucosa	stomach
35	chr5:124239400-124241800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr5:124239400-124241800	Weak transcription	Monocytes-CD14+_RO01746	blood
37	chr5:124239400-124242000	Weak transcription	Primary monocytes fromperipheralblood	blood
38	chr5:124239600-124242000	Weak transcription	Primary B cells from cord blood	blood
39	chr5:124239600-124242200	Weak transcription	Primary B cells from peripheral blood	blood
40	chr5:124239800-124242000	Weak transcription	GM12878-XiMat	blood
41	chr5:124240000-124242000	Weak transcription	Dnd41	blood
42	chr5:124240400-124242200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr5:124240400-124242800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
44	chr5:124240600-124242000	Enhancers	iPS-15b Cell Line	embryonic stem cell
45	chr5:124240600-124242000	Weak transcription	Fetal Muscle Trunk	muscle
46	chr5:124240600-124242000	Enhancers	Skeletal Muscle Male	skeletal muscle
47	chr5:124240600-124242200	Enhancers	Brain Substantia Nigra	brain
48	chr5:124240600-124242800	Enhancers	Fetal Kidney	kidney
49	chr5:124240600-124245800	Enhancers	Cortex derived primary cultured neurospheres	brain
50	chr5:124240800-124242000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell

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