Variant report

Variant	rs12654010
Chromosome Location	chr5:124242766-124242767
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10038794	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10041713	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10041724	0.87[ASN][1000 genomes]
rs10051446	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10055828	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10058365	0.93[ASN][1000 genomes]
rs10061263	0.80[ASN][1000 genomes]
rs10066786	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10070612	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10073890	0.80[ASN][1000 genomes]
rs10074013	0.80[ASN][1000 genomes]
rs10077638	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10078386	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1026010	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10463783	0.88[EUR][1000 genomes]
rs10478645	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10793807	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11241775	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11241776	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11241777	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11241779	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11743521	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11743554	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11951671	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11953197	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11958289	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12109265	0.81[ASN][1000 genomes]
rs12652556	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12652881	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12652885	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12653706	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12654041	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12654479	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12654486	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12654606	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12654613	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12655869	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12655887	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12656060	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12656194	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12656225	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12657832	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12658154	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13359971	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17152193	0.81[ASN][1000 genomes]
rs2028854	0.80[ASN][1000 genomes]
rs28375332	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35862376	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs36041674	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4240384	0.80[ASN][1000 genomes]
rs4279337	0.80[ASN][1000 genomes]
rs4311414	0.80[ASN][1000 genomes]
rs4331894	0.80[ASN][1000 genomes]
rs4836131	0.80[ASN][1000 genomes]
rs56110557	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59020249	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62370848	0.88[ASN][1000 genomes]
rs6869863	0.88[ASN][1000 genomes]
rs6875187	0.80[ASN][1000 genomes]
rs6875370	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6875763	0.80[ASN][1000 genomes]
rs6895658	0.88[ASN][1000 genomes]
rs6895765	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6898265	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73782503	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7732618	0.80[ASN][1000 genomes]
rs9327340	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9968605	0.80[ASN][1000 genomes]

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124237000-124243400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:124237600-124243000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr5:124237600-124246800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr5:124238400-124246200	Weak transcription	Aorta	Aorta
5	chr5:124240400-124242800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr5:124240600-124242800	Enhancers	Fetal Kidney	kidney
7	chr5:124240600-124245800	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr5:124240800-124242800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
9	chr5:124240800-124242800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr5:124240800-124242800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
11	chr5:124240800-124242800	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
12	chr5:124240800-124243000	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr5:124240800-124243200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr5:124240800-124244400	Enhancers	Fetal Heart	heart
15	chr5:124240800-124245400	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr5:124241400-124243000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
17	chr5:124241400-124243200	Enhancers	Duodenum Mucosa	Duodenum
18	chr5:124241400-124243400	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr5:124241400-124245600	Enhancers	Brain Germinal Matrix	brain
20	chr5:124241600-124243000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr5:124241600-124243000	Enhancers	HepG2	liver
22	chr5:124241600-124243200	Enhancers	Primary hematopoietic stem cells	blood
23	chr5:124241600-124243200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr5:124241600-124243200	Enhancers	Colon Smooth Muscle	Colon
25	chr5:124241600-124243200	Enhancers	Fetal Muscle Leg	muscle
26	chr5:124241600-124243200	Enhancers	Rectal Smooth Muscle	rectum
27	chr5:124241600-124243400	Enhancers	Fetal Stomach	stomach
28	chr5:124241600-124246000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
29	chr5:124241800-124242800	Enhancers	H1 Cell Line	embryonic stem cell
30	chr5:124241800-124242800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr5:124241800-124242800	Enhancers	Primary neutrophils fromperipheralblood	blood
32	chr5:124241800-124243200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr5:124241800-124245400	Enhancers	Adipose Nuclei	Adipose
34	chr5:124241800-124246800	Enhancers	Liver	Liver
35	chr5:124241800-124246800	Enhancers	Fetal Lung	lung
36	chr5:124242000-124242800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
37	chr5:124242000-124242800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr5:124242000-124242800	Enhancers	GM12878-XiMat	blood
39	chr5:124242000-124243000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr5:124242000-124243000	Enhancers	Primary B cells from cord blood	blood
41	chr5:124242000-124243000	Enhancers	Muscle Satellite Cultured Cells	--
42	chr5:124242000-124243000	Enhancers	Right Ventricle	heart
43	chr5:124242000-124243000	Enhancers	Stomach Mucosa	stomach
44	chr5:124242000-124243000	Enhancers	HUVEC	blood vessel
45	chr5:124242000-124243000	Enhancers	NH-A	brain
46	chr5:124242000-124243000	Enhancers	NHDF-Ad	bronchial
47	chr5:124242000-124243000	Enhancers	Osteobl	bone
48	chr5:124242000-124243200	Enhancers	Colonic Mucosa	Colon
49	chr5:124242000-124243200	Enhancers	Fetal Thymus	thymus
50	chr5:124242000-124243200	Enhancers	Left Ventricle	heart

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