Variant report

Variant	rs10038794
Chromosome Location	chr5:124236123-124236124
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10041713	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10041724	0.82[ASN][1000 genomes]
rs10051446	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10055828	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10058365	0.98[ASN][1000 genomes]
rs10066786	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10070612	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10077638	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10078386	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1026010	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10463783	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10478645	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10793807	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11241775	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11241776	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11241777	0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11241779	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11743521	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11743554	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11951671	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11953197	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11958289	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12652556	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12652881	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12652885	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12653706	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12654010	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12654041	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12654479	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12654486	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12654606	0.85[EUR][1000 genomes]
rs12654613	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12655869	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12655887	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12656060	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12656194	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12656225	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12657832	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12658154	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12658172	0.82[ASN][1000 genomes]
rs13359971	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28375332	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35862376	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs36041674	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56110557	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59020249	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60775983	0.82[ASN][1000 genomes]
rs62370848	0.90[ASN][1000 genomes]
rs6869863	0.84[ASN][1000 genomes]
rs6875370	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6895658	0.84[ASN][1000 genomes]
rs6895765	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6898265	0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73782503	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9327340	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3427099	chr5:124233328-124236251	ZNF genes & repeats Weak transcription Enhancers	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124223200-124242200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:124225800-124237800	Weak transcription	Fetal Lung	lung
3	chr5:124233400-124237600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr5:124233800-124238000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr5:124235200-124242000	Weak transcription	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links