Variant report
Variant | rs12109265 |
---|---|
Chromosome Location | chr5:124289959-124289960 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr5:124282737..124284807-chr5:124288321..124290528,2 | K562 | blood: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10041713 | 0.81[ASN][1000 genomes] |
rs10041724 | 0.88[ASN][1000 genomes] |
rs10044837 | 0.96[ASN][1000 genomes] |
rs10055285 | 0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs10055828 | 0.81[ASN][1000 genomes] |
rs10057528 | 0.81[ASN][1000 genomes] |
rs10057766 | 0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs10060023 | 0.97[ASN][1000 genomes] |
rs10061263 | 0.82[ASN][1000 genomes] |
rs10070612 | 0.81[ASN][1000 genomes] |
rs10073890 | 0.82[ASN][1000 genomes] |
rs10074013 | 0.82[ASN][1000 genomes] |
rs10078386 | 0.87[CHB][hapmap];0.81[ASN][1000 genomes] |
rs10079602 | 0.97[ASN][1000 genomes] |
rs1026010 | 0.82[ASN][1000 genomes] |
rs1031207 | 0.82[ASN][1000 genomes] |
rs10793807 | 0.80[ASN][1000 genomes] |
rs11241776 | 0.81[ASN][1000 genomes] |
rs11241779 | 0.92[ASN][1000 genomes] |
rs11743521 | 0.89[ASN][1000 genomes] |
rs11743554 | 0.87[ASN][1000 genomes] |
rs11951671 | 0.92[ASN][1000 genomes] |
rs11953197 | 0.81[ASN][1000 genomes] |
rs11958289 | 0.91[ASN][1000 genomes] |
rs12652881 | 0.82[ASN][1000 genomes] |
rs12652885 | 0.82[ASN][1000 genomes] |
rs12653706 | 0.81[ASN][1000 genomes] |
rs12654010 | 0.81[ASN][1000 genomes] |
rs12654041 | 0.81[ASN][1000 genomes] |
rs12654479 | 0.81[ASN][1000 genomes] |
rs12654486 | 0.81[ASN][1000 genomes] |
rs12655869 | 0.81[ASN][1000 genomes] |
rs12655887 | 0.81[ASN][1000 genomes] |
rs12656060 | 0.81[ASN][1000 genomes] |
rs12656225 | 0.81[ASN][1000 genomes] |
rs12657832 | 0.81[ASN][1000 genomes] |
rs12658154 | 0.81[ASN][1000 genomes] |
rs13158867 | 0.82[ASN][1000 genomes] |
rs13359971 | 0.81[ASN][1000 genomes] |
rs1374130 | 0.99[ASN][1000 genomes] |
rs17152193 | 0.97[ASN][1000 genomes] |
rs2028854 | 0.82[ASN][1000 genomes] |
rs28375332 | 0.81[ASN][1000 genomes] |
rs35862376 | 0.91[ASN][1000 genomes] |
rs36041674 | 0.89[ASN][1000 genomes] |
rs4240384 | 0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs4240385 | 0.89[ASN][1000 genomes] |
rs4279337 | 0.82[ASN][1000 genomes] |
rs4311414 | 0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs4331894 | 0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs4357030 | 0.90[ASN][1000 genomes] |
rs4540171 | 0.96[ASN][1000 genomes] |
rs4836131 | 0.82[ASN][1000 genomes] |
rs56110557 | 0.82[ASN][1000 genomes] |
rs6861021 | 0.91[ASN][1000 genomes] |
rs6861089 | 0.88[ASN][1000 genomes] |
rs6863192 | 0.95[ASN][1000 genomes] |
rs6869863 | 0.90[ASN][1000 genomes] |
rs6872411 | 0.90[ASN][1000 genomes] |
rs6875187 | 0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs6875370 | 0.81[ASN][1000 genomes] |
rs6875763 | 0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs6876036 | 0.99[ASN][1000 genomes] |
rs6895658 | 0.90[ASN][1000 genomes] |
rs6895765 | 0.81[ASN][1000 genomes] |
rs6898265 | 0.95[CHB][hapmap];0.82[ASN][1000 genomes] |
rs73782503 | 0.85[ASN][1000 genomes] |
rs7732618 | 0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs9327340 | 0.85[ASN][1000 genomes] |
rs9968605 | 0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv882822 | chr5:124250018-124449375 | Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
2 | nsv830474 | chr5:124263628-124431299 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
3 | nsv599657 | chr5:124284253-124330522 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr5:124284200-124301800 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
2 | chr5:124284800-124294000 | Weak transcription | HUES6 Cell Line | embryonic stem cell |
3 | chr5:124285600-124292000 | Weak transcription | Breast Myoepithelial Primary Cells | Breast |
4 | chr5:124287600-124297800 | Weak transcription | Adipose Nuclei | Adipose |
5 | chr5:124288000-124292600 | Weak transcription | Primary Natural Killer cells fromperipheralblood | blood |
6 | chr5:124288800-124298800 | Weak transcription | Primary B cells from cord blood | blood |
7 | chr5:124289200-124292200 | Weak transcription | Psoas Muscle | Psoas |