Variant report

Variant	rs12992342
Chromosome Location	chr2:210467771-210467772
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10198751	0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12615372	0.95[ASN][1000 genomes]
rs12616589	0.86[ASN][1000 genomes]
rs12620654	0.82[ASN][1000 genomes]
rs12622979	1.00[ASN][1000 genomes]
rs13419929	0.81[ASN][1000 genomes]
rs1396779	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1509465	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1509469	0.85[ASN][1000 genomes]
rs1509470	0.86[ASN][1000 genomes]
rs16843329	0.86[ASN][1000 genomes]
rs169636	0.86[EUR][1000 genomes]
rs2048250	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2366112	0.97[ASN][1000 genomes]
rs2663648	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2663649	0.86[ASN][1000 genomes]
rs2663650	0.84[ASN][1000 genomes]
rs2663651	0.86[ASN][1000 genomes]
rs2663653	0.86[ASN][1000 genomes]
rs2663659	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2710474	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2710475	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2710477	0.84[ASN][1000 genomes]
rs2710479	0.85[ASN][1000 genomes]
rs2710486	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs288079	0.84[EUR][1000 genomes]
rs288084	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs288087	0.80[EUR][1000 genomes]
rs288088	0.80[EUR][1000 genomes]
rs34455059	0.97[ASN][1000 genomes]
rs34850994	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs35409969	0.97[ASN][1000 genomes]
rs55911510	0.98[ASN][1000 genomes]
rs56023260	0.86[ASN][1000 genomes]
rs56775639	0.97[ASN][1000 genomes]
rs56853570	0.99[ASN][1000 genomes]
rs57781584	0.91[ASN][1000 genomes]
rs58636345	0.99[ASN][1000 genomes]
rs59032380	0.97[ASN][1000 genomes]
rs60138527	0.86[ASN][1000 genomes]
rs60359169	1.00[ASN][1000 genomes]
rs60497472	0.91[ASN][1000 genomes]
rs6726061	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6733319	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73071071	0.99[ASN][1000 genomes]
rs73071085	0.99[ASN][1000 genomes]
rs906831	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9288410	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs962475	0.86[ASN][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210460600-210477400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr2:210461800-210469400	Weak transcription	Brain Angular Gyrus	brain
3	chr2:210465000-210467800	Enhancers	Fetal Brain Male	brain
4	chr2:210465400-210468400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr2:210465400-210475200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr2:210465600-210467800	Enhancers	Brain Germinal Matrix	brain
7	chr2:210465800-210475000	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr2:210465800-210477200	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr2:210465800-210477800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr2:210466000-210467800	Enhancers	Fetal Brain Female	brain
11	chr2:210466400-210476400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr2:210466600-210469200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr2:210467000-210468400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr2:210467000-210469200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr2:210467600-210467800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr2:210467600-210468400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain

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