Variant report

Variant	rs2710486
Chromosome Location	chr2:210479385-210479386
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 110 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:110)

rs_ID	r²[population]
rs10172200	0.87[JPT][hapmap]
rs10196314	0.87[JPT][hapmap]
rs10196600	0.87[JPT][hapmap]
rs10198751	0.92[JPT][hapmap];0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10206817	0.93[JPT][hapmap]
rs10490021	0.87[JPT][hapmap]
rs10932305	0.87[JPT][hapmap]
rs11692075	0.87[JPT][hapmap]
rs12614031	0.87[JPT][hapmap]
rs12615372	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs12616589	0.83[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs12618080	0.87[JPT][hapmap]
rs12620654	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs12622979	0.97[ASN][1000 genomes]
rs12992342	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13385585	0.87[JPT][hapmap]
rs13419929	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs1396779	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1509465	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1509468	0.88[JPT][hapmap]
rs1509469	0.83[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs1509470	0.85[ASN][1000 genomes]
rs16843022	0.82[CEU][hapmap]
rs16843329	0.86[CHB][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs16843351	0.93[JPT][hapmap]
rs16843354	0.87[JPT][hapmap]
rs16843360	0.86[JPT][hapmap]
rs16843382	0.87[JPT][hapmap]
rs16843453	0.87[JPT][hapmap]
rs16843614	0.87[JPT][hapmap]
rs16843618	0.87[JPT][hapmap]
rs169636	1.00[CEU][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2048250	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2191910	0.87[JPT][hapmap]
rs2239552	0.87[JPT][hapmap]
rs2239553	0.87[JPT][hapmap]
rs2239672	0.87[JPT][hapmap]
rs2268042	0.87[JPT][hapmap]
rs2268044	0.87[JPT][hapmap]
rs2271252	0.87[JPT][hapmap]
rs2286849	0.86[JPT][hapmap]
rs2286850	0.87[JPT][hapmap]
rs2300154	0.87[JPT][hapmap]
rs2366112	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2663648	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2663649	0.86[CHB][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs2663650	0.83[ASN][1000 genomes]
rs2663651	0.86[CHB][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs2663653	1.00[CHB][hapmap];0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs2663659	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2710474	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2710475	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2710477	0.92[CHB][hapmap];0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs2710479	0.84[CHB][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs2710482	0.87[JPT][hapmap]
rs288070	1.00[CEU][hapmap]
rs288071	1.00[CEU][hapmap]
rs288079	1.00[CEU][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs288081	1.00[CEU][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs288084	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs288087	1.00[CEU][hapmap];0.93[JPT][hapmap];0.91[YRI][hapmap];0.80[EUR][1000 genomes]
rs288088	0.80[EUR][1000 genomes]
rs288094	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs288096	1.00[CEU][hapmap]
rs34455059	0.96[ASN][1000 genomes]
rs34850994	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs35409969	0.96[ASN][1000 genomes]
rs3738935	0.81[JPT][hapmap]
rs3754597	0.87[JPT][hapmap]
rs3768810	0.87[JPT][hapmap]
rs3768813	0.87[JPT][hapmap]
rs3768814	0.87[JPT][hapmap]
rs3768815	0.87[JPT][hapmap]
rs3768816	0.87[JPT][hapmap]
rs3768822	0.87[JPT][hapmap]
rs3768826	0.87[JPT][hapmap]
rs3768832	0.87[JPT][hapmap]
rs3768833	0.87[JPT][hapmap]
rs3768834	0.87[JPT][hapmap]
rs3768835	0.87[JPT][hapmap]
rs3820746	0.91[JPT][hapmap]
rs3820748	0.87[JPT][hapmap]
rs4673486	0.87[JPT][hapmap]
rs55911510	0.99[ASN][1000 genomes]
rs56023260	0.86[ASN][1000 genomes]
rs56775639	0.96[ASN][1000 genomes]
rs56853570	0.98[ASN][1000 genomes]
rs57781584	0.90[ASN][1000 genomes]
rs58636345	0.96[ASN][1000 genomes]
rs59032380	0.96[ASN][1000 genomes]
rs60138527	0.85[ASN][1000 genomes]
rs60359169	0.97[ASN][1000 genomes]
rs60497472	0.90[ASN][1000 genomes]
rs6709925	0.87[JPT][hapmap]
rs6717554	0.87[JPT][hapmap]
rs6720659	0.87[JPT][hapmap]
rs6724834	0.87[JPT][hapmap]
rs6726061	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6733319	0.92[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs6746029	0.87[JPT][hapmap]
rs723683	0.87[JPT][hapmap]
rs73071071	0.98[ASN][1000 genomes]
rs73071085	0.98[ASN][1000 genomes]
rs741006	0.87[JPT][hapmap]
rs741007	0.86[JPT][hapmap]
rs7594601	0.87[JPT][hapmap]
rs906831	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9288410	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs962475	0.86[CHB][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs994862	0.87[JPT][hapmap]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210474000-210481400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr2:210476600-210480200	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr2:210476600-210493600	Weak transcription	Aorta	Aorta
4	chr2:210477000-210480400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr2:210477200-210481600	Enhancers	H1 Cell Line	embryonic stem cell
6	chr2:210477600-210479400	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr2:210478000-210480400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr2:210478200-210480000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
9	chr2:210478400-210479600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr2:210478600-210479400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr2:210478600-210479400	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr2:210478600-210479600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr2:210478600-210479800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
14	chr2:210478600-210480000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr2:210478600-210480000	Enhancers	Brain Germinal Matrix	brain
16	chr2:210478800-210479400	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr2:210478800-210479400	Enhancers	HSMMtube	muscle
18	chr2:210478800-210479800	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
19	chr2:210479200-210479400	Flanking Active TSS	ES-WA7 Cell Line	embryonic stem cell
20	chr2:210479200-210479400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
21	chr2:210479200-210479600	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr2:210479200-210480000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr2:210479200-210484600	Weak transcription	Fetal Brain Male	brain

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