Variant report

Variant	rs2710474
Chromosome Location	chr2:210497804-210497805
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:210491764..210493575-chr2:210496638..210498677,2	MCF-7	breast:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10198751	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12615372	0.96[ASN][1000 genomes]
rs12616589	0.87[ASN][1000 genomes]
rs12620654	0.83[ASN][1000 genomes]
rs12622979	0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12992342	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs13419929	0.81[ASN][1000 genomes]
rs1396779	0.91[ASN][1000 genomes]
rs1509465	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1509468	0.81[ASN][1000 genomes]
rs1509469	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1509470	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16843329	0.87[ASN][1000 genomes]
rs2048250	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2366112	0.98[ASN][1000 genomes]
rs2663648	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2663649	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2663650	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2663651	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2663653	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2663659	0.98[ASN][1000 genomes]
rs2710475	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2710477	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2710479	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2710480	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2710486	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs34455059	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34850994	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35409969	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55911510	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs56023260	0.87[ASN][1000 genomes]
rs56775639	0.98[ASN][1000 genomes]
rs56853570	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57781584	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs58636345	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs59032380	0.98[ASN][1000 genomes]
rs60138527	0.87[ASN][1000 genomes]
rs60359169	0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs60497472	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6726061	0.91[ASN][1000 genomes]
rs6733319	0.99[ASN][1000 genomes]
rs73071071	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73071085	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs906831	1.00[ASN][1000 genomes]
rs9288410	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs962475	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754281	chr2:210484777-210543711	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210481000-210500400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr2:210489800-210500400	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr2:210490400-210499800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:210490600-210500400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr2:210493600-210500200	Weak transcription	Fetal Brain Male	brain
6	chr2:210494800-210499600	Weak transcription	Fetal Brain Female	brain
7	chr2:210494800-210517800	Weak transcription	Aorta	Aorta
8	chr2:210495000-210498600	Weak transcription	Brain Anterior Caudate	brain
9	chr2:210495000-210498800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr2:210495000-210500400	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr2:210495000-210500400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr2:210495200-210500600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr2:210495200-210500600	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr2:210496000-210498200	Weak transcription	Brain Germinal Matrix	brain
15	chr2:210496200-210506800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr2:210496200-210507000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr2:210496400-210502200	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr2:210497000-210500000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr2:210497200-210498000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr2:210497800-210499000	Enhancers	Pancreatic Islets	Pancreatic Islet

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links