Variant report

Variant	rs13230541
Chromosome Location	chr7:97473283-97473284
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:96733675..96734581-chr7:97473113..97473969,2	MCF-7	breast:
2	chr7:96733598..96734225-chr7:97473208..97474003,2	MCF-7	breast:

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs1049677	0.84[EUR][1000 genomes]
rs11763921	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11767488	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12113519	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13231214	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13232045	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13232142	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13238313	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1397203	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1397204	1.00[ASN][1000 genomes]
rs1397205	1.00[ASN][1000 genomes]
rs1510306	1.00[ASN][1000 genomes]
rs17131823	0.88[CEU][hapmap];0.92[EUR][1000 genomes]
rs17169082	0.84[ASN][1000 genomes]
rs17169102	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17169185	0.88[CEU][hapmap];0.92[EUR][1000 genomes]
rs17169186	0.88[CEU][hapmap];0.92[EUR][1000 genomes]
rs17169191	0.88[CEU][hapmap];0.92[EUR][1000 genomes]
rs17344752	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2530121	0.84[AFR][1000 genomes]
rs28505181	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34727943	0.92[ASN][1000 genomes]
rs34815427	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34832720	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35190368	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35337801	0.92[ASN][1000 genomes]
rs35378128	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35424999	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35500839	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35532973	1.00[ASN][1000 genomes]
rs35700925	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35950761	0.92[ASN][1000 genomes]
rs36076129	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36123498	0.92[ASN][1000 genomes]
rs36198307	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36199127	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41278833	0.92[EUR][1000 genomes]
rs60876280	0.92[ASN][1000 genomes]
rs67157089	0.92[ASN][1000 genomes]
rs67877395	0.92[ASN][1000 genomes]
rs6950092	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6952335	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6952362	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6960541	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6960981	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6966189	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6967582	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6967590	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6968035	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6968079	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6968319	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6968597	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71561640	0.92[ASN][1000 genomes]
rs71563535	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71563539	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71563540	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7787070	1.00[ASN][1000 genomes]
rs7795107	0.88[CEU][hapmap];1.00[JPT][hapmap]
rs7800135	0.88[CEU][hapmap];0.92[EUR][1000 genomes]
rs7801604	0.84[ASN][1000 genomes]
rs9690584	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031371	chr7:97312452-98070538	Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv428178	chr7:97402756-97648029	Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:97472400-97473600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr7:97472800-97483000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr7:97473000-97473400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr7:97473000-97480800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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