Variant report

Variant	rs17169082
Chromosome Location	chr7:97402268-97402269
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 132 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs11763921	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11767488	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12113519	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13230541	0.84[ASN][1000 genomes]
rs13231214	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13232045	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13232142	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13238313	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1397203	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1397204	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1397205	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1510306	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17131823	1.00[CEU][hapmap]
rs17169102	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17169185	1.00[CEU][hapmap]
rs17169186	1.00[CEU][hapmap]
rs17169191	1.00[CEU][hapmap]
rs17344752	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs28505181	0.84[ASN][1000 genomes]
rs34727943	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34815427	0.84[ASN][1000 genomes]
rs34832720	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35190368	0.84[ASN][1000 genomes]
rs35337801	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35378128	0.84[ASN][1000 genomes]
rs35424999	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35500839	0.88[EUR][1000 genomes]
rs35532973	0.84[ASN][1000 genomes]
rs35700925	0.84[ASN][1000 genomes]
rs35950761	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs36076129	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs36123498	0.92[ASN][1000 genomes]
rs36198307	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs36199127	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60876280	0.92[ASN][1000 genomes]
rs67157089	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67877395	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6950092	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6952335	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6952362	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6960541	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6960981	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6966189	0.84[ASN][1000 genomes]
rs6967582	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6967590	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6968035	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6968079	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6968319	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6968597	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs71561640	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs71563535	0.84[ASN][1000 genomes]
rs71563539	0.84[ASN][1000 genomes]
rs71563540	0.84[ASN][1000 genomes]
rs7787070	0.84[ASN][1000 genomes]
rs7795107	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7800135	1.00[CEU][hapmap]
rs7801604	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:75 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3359061	chr7:96997047-97402692	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv888757	chr7:97003503-97461115	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1027086	chr7:97076283-97404597	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv888759	chr7:97283118-97422195	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv1031371	chr7:97312452-98070538	Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
6	nsv1022849	chr7:97372593-97404228	Flanking Active TSS Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv508473	chr7:97385368-97407164	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1026925	chr7:97385561-97402463	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv1025219	chr7:97385561-97404228	Flanking Active TSS Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv1025306	chr7:97385561-97404911	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv1025570	chr7:97385561-97405111	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv1034752	chr7:97385561-97422926	Weak transcription ZNF genes & repeats Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv2761089	chr7:97385573-97402475	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv2764049	chr7:97385573-97407061	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv6	chr7:97385573-97423298	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv5858	chr7:97385573-97423298	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv1021820	chr7:97385723-97404501	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv1017392	chr7:97385921-97438035	Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
19	nsv8178	chr7:97386974-97403065	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
20	esv1825969	chr7:97387852-97402323	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
21	esv1828213	chr7:97387852-97402323	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
22	nsv511364	chr7:97389030-97403141	Flanking Active TSS Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
23	nsv516307	chr7:97389030-97422926	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
24	esv1833572	chr7:97390715-97403357	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
25	nsv436563	chr7:97392165-97420411	Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
26	nsv819377	chr7:97392192-97403193	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
27	nsv511980	chr7:97394371-97402774	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
28	esv3514924	chr7:97394516-97403764	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
29	esv3514925	chr7:97394673-97403282	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
30	esv3514923	chr7:97394866-97403664	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
31	esv3514926	chr7:97394866-97403664	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
32	nsv499098	chr7:97395301-97402645	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
33	esv1829500	chr7:97395448-97402463	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
34	esv1833204	chr7:97395448-97402463	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
35	nsv1026522	chr7:97395448-97405579	Weak transcription Flanking Active TSS Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
36	nsv1030644	chr7:97395448-97407049	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
37	nsv1017302	chr7:97395448-97422926	Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
38	esv2422176	chr7:97395460-97402475	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
39	esv1828865	chr7:97395463-97403357	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
40	esv17011	chr7:97396010-97402601	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
41	nsv824222	chr7:97396272-97402523	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
42	nsv824223	chr7:97396272-97403085	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
43	esv1825224	chr7:97396472-97402323	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
44	nsv514434	chr7:97396472-97402384	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
45	nsv824224	chr7:97396595-97402523	Flanking Active TSS Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
46	esv1825438	chr7:97396603-97402569	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
47	esv1825909	chr7:97396603-97402569	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
48	esv1826002	chr7:97396603-97402569	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
49	esv1828631	chr7:97396603-97402569	Flanking Active TSS Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
50	esv1829980	chr7:97396603-97402569	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:97400000-97402800	Enhancers	Rectal Mucosa Donor 31	rectum
2	chr7:97400000-97403800	Enhancers	Fetal Intestine Large	intestine
3	chr7:97400600-97403800	Enhancers	Fetal Intestine Small	intestine
4	chr7:97400800-97402400	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr7:97401400-97403000	Enhancers	Duodenum Mucosa	Duodenum
6	chr7:97402200-97402400	Flanking Active TSS	Stomach Mucosa	stomach

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