Variant report

Variant	rs35532973
Chromosome Location	chr7:97408774-97408775
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs11763921	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11767488	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12113519	1.00[ASN][1000 genomes]
rs13230541	1.00[ASN][1000 genomes]
rs13231214	1.00[ASN][1000 genomes]
rs13232045	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13232142	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13238313	1.00[ASN][1000 genomes]
rs1397203	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1397204	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1397205	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1510306	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17169082	0.84[ASN][1000 genomes]
rs17169102	1.00[ASN][1000 genomes]
rs17344752	1.00[ASN][1000 genomes]
rs28505181	1.00[ASN][1000 genomes]
rs34727943	0.92[ASN][1000 genomes]
rs34815427	1.00[ASN][1000 genomes]
rs34832720	1.00[ASN][1000 genomes]
rs35190368	1.00[ASN][1000 genomes]
rs35337801	0.92[ASN][1000 genomes]
rs35378128	1.00[ASN][1000 genomes]
rs35424999	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35500839	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs35700925	1.00[ASN][1000 genomes]
rs35950761	0.92[ASN][1000 genomes]
rs36076129	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs36123498	0.92[ASN][1000 genomes]
rs36198307	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs36199127	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60876280	0.92[ASN][1000 genomes]
rs67157089	0.92[ASN][1000 genomes]
rs67877395	0.92[ASN][1000 genomes]
rs6950092	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6952335	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6952362	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6960541	1.00[ASN][1000 genomes]
rs6960981	1.00[ASN][1000 genomes]
rs6966189	1.00[ASN][1000 genomes]
rs6967582	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6967590	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6968035	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6968079	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6968319	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6968597	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs71561640	0.92[ASN][1000 genomes]
rs71563535	1.00[ASN][1000 genomes]
rs71563539	1.00[ASN][1000 genomes]
rs71563540	1.00[ASN][1000 genomes]
rs7787070	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7801604	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888757	chr7:97003503-97461115	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv888759	chr7:97283118-97422195	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv1031371	chr7:97312452-98070538	Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	nsv1034752	chr7:97385561-97422926	Weak transcription ZNF genes & repeats Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv6	chr7:97385573-97423298	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv5858	chr7:97385573-97423298	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1017392	chr7:97385921-97438035	Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv516307	chr7:97389030-97422926	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv436563	chr7:97392165-97420411	Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv1017302	chr7:97395448-97422926	Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv428178	chr7:97402756-97648029	Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:97408400-97408800	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr7:97408400-97408800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
3	chr7:97408400-97408800	Enhancers	H1 Cell Line	embryonic stem cell
4	chr7:97408400-97408800	Active TSS	iPS-15b Cell Line	embryonic stem cell
5	chr7:97408400-97408800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr7:97408600-97408800	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
7	chr7:97408600-97408800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell

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