Variant report

Variant	rs67877395
Chromosome Location	chr7:97363472-97363473
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs11763921	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11767488	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12113519	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13230541	0.92[ASN][1000 genomes]
rs13231214	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13232045	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13232142	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13238313	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1397203	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1397204	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1397205	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1510306	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17169082	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17169102	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17344752	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28505181	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34727943	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34815427	0.92[ASN][1000 genomes]
rs34832720	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35190368	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35337801	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35378128	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35424999	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35500839	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35532973	0.92[ASN][1000 genomes]
rs35700925	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35950761	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36076129	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs36123498	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36198307	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs36199127	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60876280	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67157089	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6950092	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6952335	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6952362	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6960541	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6960981	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6966189	0.92[ASN][1000 genomes]
rs6967582	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6967590	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6968035	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6968079	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6968319	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6968597	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs71561640	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71563535	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs71563539	0.92[ASN][1000 genomes]
rs71563540	0.92[ASN][1000 genomes]
rs7787070	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7801604	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3359061	chr7:96997047-97402692	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv888757	chr7:97003503-97461115	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1027086	chr7:97076283-97404597	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv888759	chr7:97283118-97422195	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv1031371	chr7:97312452-98070538	Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
6	nsv437559	chr7:97361784-97383320	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:97360600-97363600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
2	chr7:97360600-97363600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
3	chr7:97360800-97363600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
4	chr7:97361000-97363600	Bivalent Enhancer	Fetal Intestine Large	intestine
5	chr7:97361200-97363600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
6	chr7:97362200-97363600	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
7	chr7:97362400-97363600	Bivalent Enhancer	Primary hematopoietic stem cells	blood
8	chr7:97362400-97363600	Flanking Bivalent TSS/Enh	Brain Substantia Nigra	brain
9	chr7:97362600-97363600	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
10	chr7:97362800-97363600	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
11	chr7:97362800-97363600	Bivalent Enhancer	Fetal Brain Male	brain
12	chr7:97363000-97363600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr7:97363000-97363600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
14	chr7:97363200-97363600	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr7:97363200-97363600	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
16	chr7:97363200-97363600	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
17	chr7:97363200-97363600	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
18	chr7:97363200-97363600	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr7:97363200-97363600	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
20	chr7:97363200-97363600	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain
21	chr7:97363200-97363600	Bivalent/Poised TSS	Fetal Kidney	kidney
22	chr7:97363400-97363600	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
23	chr7:97363400-97363600	Flanking Bivalent TSS/Enh	H9 Cell Line	embryonic stem cell
24	chr7:97363400-97363600	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr7:97363400-97363600	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
26	chr7:97363400-97363600	Bivalent/Poised TSS	Brain Angular Gyrus	brain
27	chr7:97363400-97363600	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
28	chr7:97363400-97363600	Bivalent Enhancer	Colon Smooth Muscle	Colon
29	chr7:97363400-97363600	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
30	chr7:97363400-97363800	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr7:97363400-97363800	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr7:97363400-97363800	Flanking Bivalent TSS/Enh	Brain Anterior Caudate	brain
33	chr7:97363400-97363800	Bivalent Enhancer	Brain Cingulate Gyrus	brain
34	chr7:97363400-97364000	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links