Variant report

Variant	rs71561640
Chromosome Location	chr7:97355858-97355859
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:97355540..97357624-chr7:97360814..97362547,2	K562	blood:

Variant related genes	Relation type
ENSG00000006128	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs11763921	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11767488	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12113519	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13230541	0.92[ASN][1000 genomes]
rs13231214	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13232045	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13232142	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13238313	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1397203	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1397204	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1397205	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1510306	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17169082	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17169102	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17344752	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28505181	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34727943	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34815427	0.92[ASN][1000 genomes]
rs34832720	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35190368	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35337801	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35378128	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35424999	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35500839	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35532973	0.92[ASN][1000 genomes]
rs35700925	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35950761	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36076129	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs36123498	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36198307	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs36199127	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60876280	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67157089	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67877395	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6950092	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6952335	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6952362	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6960541	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6960981	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6966189	0.92[ASN][1000 genomes]
rs6967582	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6967590	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6968035	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6968079	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6968319	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6968597	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs71563535	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs71563539	0.92[ASN][1000 genomes]
rs71563540	0.92[ASN][1000 genomes]
rs7787070	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7801604	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3359061	chr7:96997047-97402692	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv888757	chr7:97003503-97461115	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1027086	chr7:97076283-97404597	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv888759	chr7:97283118-97422195	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv1031371	chr7:97312452-98070538	Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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