Variant report

Variant	rs35190368
Chromosome Location	chr7:97481248-97481249
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs1049677	0.89[EUR][1000 genomes]
rs11763921	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11767488	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12113519	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13230541	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13231214	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13232045	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13232142	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13238313	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1397203	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1397204	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1397205	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1510306	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17131823	0.98[EUR][1000 genomes]
rs17169082	0.84[ASN][1000 genomes]
rs17169102	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17169185	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17169186	0.98[EUR][1000 genomes]
rs17169191	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17344752	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28505181	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34727943	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34815427	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34832720	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35337801	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35378128	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35424999	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35500839	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35532973	1.00[ASN][1000 genomes]
rs35700925	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35950761	0.92[ASN][1000 genomes]
rs36076129	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36123498	0.92[ASN][1000 genomes]
rs36198307	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36199127	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41278833	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs60876280	0.92[ASN][1000 genomes]
rs67157089	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67877395	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6950092	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6952335	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6952362	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6960541	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6960981	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6966189	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6967582	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6967590	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6968035	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6968079	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6968319	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6968597	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71561640	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs71563535	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71563539	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71563540	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7787070	1.00[ASN][1000 genomes]
rs7800135	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7801604	0.84[ASN][1000 genomes]
rs9690584	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031371	chr7:97312452-98070538	Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv428178	chr7:97402756-97648029	Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	esv2758124	chr7:97476284-97648029	Strong transcription Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	esv2759546	chr7:97476284-97648029	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:97472800-97483000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr7:97474800-97482600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr7:97475000-97492800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr7:97477200-97485400	Weak transcription	Primary hematopoietic stem cells	blood
5	chr7:97477600-97500600	Weak transcription	Thymus	Thymus
6	chr7:97477800-97481400	Weak transcription	Fetal Lung	lung
7	chr7:97478600-97483400	Weak transcription	Osteobl	bone
8	chr7:97479000-97501000	Weak transcription	Fetal Intestine Large	intestine
9	chr7:97479200-97486200	Weak transcription	Small Intestine	intestine
10	chr7:97479200-97500800	Weak transcription	Right Ventricle	heart
11	chr7:97479400-97483400	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr7:97479400-97484400	Weak transcription	Hela-S3	cervix
13	chr7:97479400-97487200	Weak transcription	Left Ventricle	heart
14	chr7:97479400-97501000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr7:97479400-97501000	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr7:97479600-97481400	Weak transcription	HMEC	breast
17	chr7:97479600-97483400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr7:97479600-97486800	Weak transcription	NH-A	brain
19	chr7:97479600-97487000	Weak transcription	Fetal Stomach	stomach
20	chr7:97479600-97501000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr7:97479800-97482200	Weak transcription	Psoas Muscle	Psoas
22	chr7:97479800-97500200	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr7:97480000-97481600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr7:97480000-97482400	Weak transcription	NHEK	skin
25	chr7:97480000-97491800	Weak transcription	Stomach Mucosa	stomach
26	chr7:97480200-97482000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr7:97480200-97500600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr7:97480600-97482800	Strong transcription	Brain Hippocampus Middle	brain
29	chr7:97480600-97483400	Weak transcription	Liver	Liver
30	chr7:97480600-97484200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr7:97480600-97488600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr7:97480600-97488800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr7:97480600-97489600	Strong transcription	HUES6 Cell Line	embryonic stem cell
34	chr7:97480600-97498200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr7:97480600-97498200	Strong transcription	K562	blood
36	chr7:97480600-97498600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
37	chr7:97480800-97481400	Enhancers	Colon Smooth Muscle	Colon
38	chr7:97480800-97481800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr7:97480800-97481800	Strong transcription	Fetal Muscle Trunk	muscle
40	chr7:97480800-97482000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr7:97480800-97482200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr7:97480800-97482400	Strong transcription	Ovary	ovary
43	chr7:97480800-97482600	Strong transcription	Fetal Muscle Leg	muscle
44	chr7:97480800-97482800	Strong transcription	Brain Germinal Matrix	brain
45	chr7:97480800-97483000	Strong transcription	A549	lung
46	chr7:97480800-97483200	Weak transcription	NHLF	lung
47	chr7:97480800-97483400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr7:97480800-97483600	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
49	chr7:97480800-97484000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr7:97480800-97484000	Strong transcription	Cortex derived primary cultured neurospheres	brain

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