Variant report

Variant	rs13238313
Chromosome Location	chr7:97475391-97475392
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:96808469..96808972-chr7:97474754..97475493,2	MCF-7	breast:
2	chr7:97128674..97129320-chr7:97474641..97475573,2	K562	blood:
3	chr7:97473534..97475763-chr7:97482932..97484679,2	K562	blood:

Variant related genes	Relation type
ENSG00000070669	Chromatin interaction

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs1049677	0.89[EUR][1000 genomes]
rs11763921	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11767488	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12113519	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13230541	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13231214	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13232045	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13232142	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1397203	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1397204	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1397205	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1510306	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17131823	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs17169082	0.84[ASN][1000 genomes]
rs17169102	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17169185	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17169186	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs17169191	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17344752	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2530121	0.81[AFR][1000 genomes]
rs28505181	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34727943	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34815427	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34832720	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35190368	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35337801	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35378128	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35424999	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35500839	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35532973	1.00[ASN][1000 genomes]
rs35700925	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35950761	0.92[ASN][1000 genomes]
rs36076129	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36123498	0.92[ASN][1000 genomes]
rs36198307	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36199127	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41278833	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs60876280	0.92[ASN][1000 genomes]
rs67157089	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67877395	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6950092	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6952335	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6952362	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6960541	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6960981	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6966189	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6967582	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6967590	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6968035	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6968079	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6968319	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6968597	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71561640	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs71563535	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71563539	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71563540	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7787070	1.00[ASN][1000 genomes]
rs7795107	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs7800135	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7801604	0.84[ASN][1000 genomes]
rs9690584	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031371	chr7:97312452-98070538	Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv428178	chr7:97402756-97648029	Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:97472800-97483000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr7:97473000-97480800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr7:97473400-97480800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr7:97474400-97480800	Weak transcription	Brain Germinal Matrix	brain
5	chr7:97474800-97482600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr7:97475000-97492800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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