Variant report

Variant	rs6968035
Chromosome Location	chr7:97406575-97406576
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:97399083..97401485-chr7:97404504..97407058,2	K562	blood:

Extended variants
information (count: 73 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs11763921	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11767488	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12113519	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13230541	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13231214	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13232045	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13232142	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13238313	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1397203	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1397204	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1397205	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1510306	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17131823	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs17169082	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17169102	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17169185	1.00[CEU][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs17169186	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs17169191	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs17344752	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28505181	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34727943	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34815427	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34832720	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35190368	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35337801	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35378128	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35424999	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35500839	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35532973	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35700925	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35950761	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs36076129	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36123498	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs36198307	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36199127	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41278833	0.86[EUR][1000 genomes]
rs60876280	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67157089	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67877395	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6950092	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6952335	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6952362	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6960541	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6960981	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6966189	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6967582	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6967590	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6968079	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6968319	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6968597	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71561640	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs71563535	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71563539	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71563540	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7787070	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7795107	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap]
rs7800135	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs7801604	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9690584	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888757	chr7:97003503-97461115	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv888759	chr7:97283118-97422195	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv1031371	chr7:97312452-98070538	Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	nsv508473	chr7:97385368-97407164	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1034752	chr7:97385561-97422926	Weak transcription ZNF genes & repeats Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2764049	chr7:97385573-97407061	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv6	chr7:97385573-97423298	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv5858	chr7:97385573-97423298	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv1017392	chr7:97385921-97438035	Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv516307	chr7:97389030-97422926	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv436563	chr7:97392165-97420411	Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv1030644	chr7:97395448-97407049	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv1017302	chr7:97395448-97422926	Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv428178	chr7:97402756-97648029	Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs6968035	LMO3	trans	lymphoblastoid	seeQTL
rs6968035	ATP1B1	trans	lymphoblastoid	seeQTL
rs6968035	PTPRK	trans	lymphoblastoid	seeQTL
rs6968035	OAS3	trans	lymphoblastoid	seeQTL
rs6968035	LOC100268168	trans	lymphoblastoid	seeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:97403800-97406600	Weak transcription	Fetal Intestine Large	intestine

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