Variant report

Variant	rs17169102
Chromosome Location	chr7:97427634-97427635
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:97424753..97427686-chr7:97428619..97431033,2	K562	blood:

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs1049677	0.85[EUR][1000 genomes]
rs11763921	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11767488	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12113519	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13230541	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13231214	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13232045	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13232142	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13238313	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1397203	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1397204	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1397205	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1510306	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17131823	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs17169082	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17169185	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs17169186	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs17169191	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs17344752	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28505181	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34727943	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34815427	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34832720	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35190368	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35337801	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35378128	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35424999	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35500839	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35532973	1.00[ASN][1000 genomes]
rs35700925	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35950761	0.92[ASN][1000 genomes]
rs36076129	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36123498	0.92[ASN][1000 genomes]
rs36198307	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36199127	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41278833	0.94[EUR][1000 genomes]
rs60876280	0.92[ASN][1000 genomes]
rs67157089	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67877395	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6950092	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6952335	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6952362	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6960541	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6960981	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6966189	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6967582	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6967590	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6968035	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6968079	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6968319	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6968597	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71561640	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs71563535	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71563539	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71563540	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7787070	1.00[ASN][1000 genomes]
rs7795107	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs7800135	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs7801604	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9690584	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888757	chr7:97003503-97461115	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1031371	chr7:97312452-98070538	Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	nsv1017392	chr7:97385921-97438035	Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv428178	chr7:97402756-97648029	Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
5	nsv1017573	chr7:97420637-97452527	Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:97427000-97428800	Enhancers	Duodenum Mucosa	Duodenum
2	chr7:97427200-97428000	Enhancers	Pancreas	Pancrea
3	chr7:97427200-97428400	Enhancers	Fetal Intestine Small	intestine
4	chr7:97427200-97428600	Enhancers	Fetal Intestine Large	intestine
5	chr7:97427400-97428200	Enhancers	HepG2	liver
6	chr7:97427600-97427800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum

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