The 2.0 version of rSNPBase

Variant report

Variant rs13421823
Chromosome Location chr2:189938960-189938961
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:55 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:189895200-189940800 Strong transcription HSMM muscle
2 chr2:189895600-189965200 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
3 chr2:189896200-189962400 Weak transcription Left Ventricle heart
4 chr2:189897000-189949000 Weak transcription HUES64 Cell Line embryonic stem cell
5 chr2:189899000-189939200 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
6 chr2:189900800-189964400 Weak transcription ES-WA7 Cell Line embryonic stem cell
7 chr2:189901200-189947400 Weak transcription Fetal Brain Male brain
8 chr2:189904400-189951000 Weak transcription Fetal Adrenal Gland Adrenal Gland
9 chr2:189912400-189961600 Weak transcription ES-I3 Cell Line embryonic stem cell
10 chr2:189914800-189946800 Weak transcription Rectal Smooth Muscle rectum
11 chr2:189915000-189950600 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
12 chr2:189915400-189951000 Strong transcription Osteobl bone
13 chr2:189916200-189947600 Weak transcription Spleen Spleen
14 chr2:189922800-189980800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
15 chr2:189925600-189940600 Weak transcription Skeletal Muscle Female skeletal muscle
16 chr2:189928200-189940800 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
17 chr2:189929400-189941000 Weak transcription Duodenum Mucosa Duodenum
18 chr2:189929600-189951400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
19 chr2:189931200-189941200 Weak transcription Breast Myoepithelial Primary Cells Breast
20 chr2:189931400-189940600 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
21 chr2:189933000-189940600 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
22 chr2:189933000-189941000 Weak transcription Ovary ovary
23 chr2:189933000-189960400 Weak transcription Placenta Amnion Placenta Amnion
24 chr2:189933000-189980200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
25 chr2:189933200-189946800 Weak transcription Fetal Kidney kidney
26 chr2:189933800-189939000 Weak transcription HUVEC blood vessel
27 chr2:189933800-189941200 Weak transcription Aorta Aorta
28 chr2:189933800-189947400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
29 chr2:189933800-189947400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
30 chr2:189933800-189957800 Weak transcription Fetal Intestine Small intestine
31 chr2:189935000-189945800 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
32 chr2:189935000-189946000 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
33 chr2:189935200-189947200 Strong transcription A549 lung
34 chr2:189935400-189941000 Weak transcription Fetal Stomach stomach
35 chr2:189935600-189940600 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
36 chr2:189936400-189939000 Weak transcription Colon Smooth Muscle Colon
37 chr2:189936400-189939000 Weak transcription Stomach Smooth Muscle stomach
38 chr2:189936400-189939400 Weak transcription Fetal Muscle Leg muscle
39 chr2:189936600-189939000 Weak transcription Duodenum Smooth Muscle Duodenum
40 chr2:189936600-189939200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
41 chr2:189936600-189939200 Weak transcription Fetal Lung lung
42 chr2:189936600-189940600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
43 chr2:189936600-189940600 Weak transcription Fetal Intestine Large intestine
44 chr2:189936600-189969200 Weak transcription Liver Liver
45 chr2:189936800-189939000 Weak transcription Placenta Placenta
46 chr2:189937000-189940000 Weak transcription Fetal Muscle Trunk muscle
47 chr2:189937800-189939000 Weak transcription NHLF lung
48 chr2:189938000-189940600 Weak transcription HSMMtube muscle
49 chr2:189938000-189941000 Strong transcription Muscle Satellite Cultured Cells --
50 chr2:189938200-189951200 Strong transcription NH-A brain

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Last update: Aug 31, 2015