The 2.0 version of rSNPBase

Variant report

Variant rs7421643
Chromosome Location chr2:189961031-189961032
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:51 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:189895600-189965200 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
2 chr2:189896200-189962400 Weak transcription Left Ventricle heart
3 chr2:189900800-189964400 Weak transcription ES-WA7 Cell Line embryonic stem cell
4 chr2:189912400-189961600 Weak transcription ES-I3 Cell Line embryonic stem cell
5 chr2:189922800-189980800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
6 chr2:189933000-189980200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
7 chr2:189936600-189969200 Weak transcription Liver Liver
8 chr2:189941200-189975000 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
9 chr2:189942800-189961800 Weak transcription Aorta Aorta
10 chr2:189947200-189961200 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
11 chr2:189947600-189961800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
12 chr2:189947600-189980800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
13 chr2:189948200-189980600 Weak transcription Placenta Placenta
14 chr2:189948600-189974800 Weak transcription Breast Myoepithelial Primary Cells Breast
15 chr2:189950200-189961600 Weak transcription Sigmoid Colon Sigmoid Colon
16 chr2:189950800-189961400 Weak transcription Fetal Kidney kidney
17 chr2:189950800-189977800 Weak transcription Fetal Intestine Large intestine
18 chr2:189951800-189961400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
19 chr2:189952000-189961600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
20 chr2:189954800-189980400 Weak transcription Ovary ovary
21 chr2:189956800-189962600 Genic enhancers HSMM muscle
22 chr2:189957000-189961600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
23 chr2:189958000-189961800 Weak transcription Fetal Intestine Small intestine
24 chr2:189958000-189962000 Genic enhancers A549 lung
25 chr2:189958000-189968000 Weak transcription Stomach Smooth Muscle stomach
26 chr2:189958200-189981000 Weak transcription Fetal Stomach stomach
27 chr2:189959400-189961200 Genic enhancers Osteobl bone
28 chr2:189959400-189962200 Genic enhancers IMR90 fetal lung fibroblasts Cell Line lung
29 chr2:189959400-189962600 Strong transcription Fetal Muscle Leg muscle
30 chr2:189959400-189963200 Genic enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
31 chr2:189959600-189962800 Genic enhancers Muscle Satellite Cultured Cells --
32 chr2:189960000-189961200 Weak transcription Adipose Nuclei Adipose
33 chr2:189960200-189962800 Enhancers HUVEC blood vessel
34 chr2:189960200-189973800 Weak transcription Duodenum Smooth Muscle Duodenum
35 chr2:189960400-189961200 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
36 chr2:189960400-189961600 Weak transcription Colon Smooth Muscle Colon
37 chr2:189960400-189961600 Enhancers Placenta Amnion Placenta Amnion
38 chr2:189960400-189974400 Weak transcription HUES6 Cell Line embryonic stem cell
39 chr2:189960600-189961400 Strong transcription NHDF-Ad bronchial
40 chr2:189960800-189961400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
41 chr2:189960800-189961400 Weak transcription NH-A brain
42 chr2:189960800-189961600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
43 chr2:189960800-189961600 Weak transcription NHLF lung
44 chr2:189960800-189961800 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
45 chr2:189960800-189961800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
46 chr2:189960800-189961800 Weak transcription HSMMtube muscle
47 chr2:189960800-189962000 Weak transcription Fetal Heart heart
48 chr2:189960800-189962800 Weak transcription Fetal Lung lung
49 chr2:189960800-189967600 Weak transcription Fetal Muscle Trunk muscle
50 chr2:189961000-189961400 Weak transcription Rectal Smooth Muscle rectum

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Last update: Aug 31, 2015