The 2.0 version of rSNPBase

Variant report

Variant rs72904488
Chromosome Location chr2:189951092-189951093
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:52 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:189895600-189965200 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
2 chr2:189896200-189962400 Weak transcription Left Ventricle heart
3 chr2:189900800-189964400 Weak transcription ES-WA7 Cell Line embryonic stem cell
4 chr2:189912400-189961600 Weak transcription ES-I3 Cell Line embryonic stem cell
5 chr2:189922800-189980800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
6 chr2:189929600-189951400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
7 chr2:189933000-189960400 Weak transcription Placenta Amnion Placenta Amnion
8 chr2:189933000-189980200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
9 chr2:189933800-189957800 Weak transcription Fetal Intestine Small intestine
10 chr2:189936600-189969200 Weak transcription Liver Liver
11 chr2:189938200-189951200 Strong transcription NH-A brain
12 chr2:189938400-189951800 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
13 chr2:189941200-189975000 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
14 chr2:189942400-189954200 Weak transcription Ovary ovary
15 chr2:189942800-189961800 Weak transcription Aorta Aorta
16 chr2:189944000-189953600 Weak transcription Duodenum Smooth Muscle Duodenum
17 chr2:189945600-189952800 Weak transcription HUES6 Cell Line embryonic stem cell
18 chr2:189947200-189961200 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
19 chr2:189947400-189951200 Genic enhancers NHLF lung
20 chr2:189947400-189958000 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
21 chr2:189947600-189961800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
22 chr2:189947600-189980800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
23 chr2:189947800-189951400 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
24 chr2:189947800-189957000 Weak transcription Rectal Smooth Muscle rectum
25 chr2:189948200-189957800 Weak transcription Psoas Muscle Psoas
26 chr2:189948200-189958000 Weak transcription Skeletal Muscle Female skeletal muscle
27 chr2:189948200-189959200 Weak transcription Fetal Brain Male brain
28 chr2:189948200-189980600 Weak transcription Placenta Placenta
29 chr2:189948600-189974800 Weak transcription Breast Myoepithelial Primary Cells Breast
30 chr2:189948800-189952800 Weak transcription Colon Smooth Muscle Colon
31 chr2:189949400-189952000 Genic enhancers A549 lung
32 chr2:189949600-189952200 Genic enhancers HSMM muscle
33 chr2:189949800-189951600 Strong transcription Fetal Muscle Trunk muscle
34 chr2:189950200-189954200 Weak transcription Fetal Stomach stomach
35 chr2:189950200-189961600 Weak transcription Sigmoid Colon Sigmoid Colon
36 chr2:189950400-189951400 Genic enhancers NHDF-Ad bronchial
37 chr2:189950400-189951600 Enhancers Fetal Lung lung
38 chr2:189950400-189952000 Genic enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
39 chr2:189950600-189952800 Genic enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
40 chr2:189950600-189953800 Weak transcription Stomach Smooth Muscle stomach
41 chr2:189950800-189951800 Genic enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
42 chr2:189950800-189954000 Weak transcription Fetal Muscle Leg muscle
43 chr2:189950800-189954000 Weak transcription HSMMtube muscle
44 chr2:189950800-189954200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
45 chr2:189950800-189961400 Weak transcription Fetal Kidney kidney
46 chr2:189950800-189977800 Weak transcription Fetal Intestine Large intestine
47 chr2:189951000-189951600 Enhancers Muscle Satellite Cultured Cells --
48 chr2:189951000-189952200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
49 chr2:189951000-189952600 Weak transcription Adipose Nuclei Adipose
50 chr2:189951000-189953800 Genic enhancers Osteobl bone

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Last update: Aug 31, 2015