The 2.0 version of rSNPBase

Variant report

Variant rs56074008
Chromosome Location chr2:189946996-189946997
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:53 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:189895600-189965200 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
2 chr2:189896200-189962400 Weak transcription Left Ventricle heart
3 chr2:189897000-189949000 Weak transcription HUES64 Cell Line embryonic stem cell
4 chr2:189900800-189964400 Weak transcription ES-WA7 Cell Line embryonic stem cell
5 chr2:189901200-189947400 Weak transcription Fetal Brain Male brain
6 chr2:189904400-189951000 Weak transcription Fetal Adrenal Gland Adrenal Gland
7 chr2:189912400-189961600 Weak transcription ES-I3 Cell Line embryonic stem cell
8 chr2:189915000-189950600 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
9 chr2:189915400-189951000 Strong transcription Osteobl bone
10 chr2:189916200-189947600 Weak transcription Spleen Spleen
11 chr2:189922800-189980800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
12 chr2:189929600-189951400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
13 chr2:189933000-189960400 Weak transcription Placenta Amnion Placenta Amnion
14 chr2:189933000-189980200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
15 chr2:189933800-189947400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
16 chr2:189933800-189947400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
17 chr2:189933800-189957800 Weak transcription Fetal Intestine Small intestine
18 chr2:189935200-189947200 Strong transcription A549 lung
19 chr2:189936600-189969200 Weak transcription Liver Liver
20 chr2:189938200-189951200 Strong transcription NH-A brain
21 chr2:189938400-189951800 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
22 chr2:189938600-189947200 Strong transcription Adipose Nuclei Adipose
23 chr2:189940000-189948000 Weak transcription Placenta Placenta
24 chr2:189941200-189975000 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
25 chr2:189941400-189947400 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
26 chr2:189941400-189947400 Weak transcription Skeletal Muscle Female skeletal muscle
27 chr2:189941400-189947400 Strong transcription HSMM muscle
28 chr2:189941600-189947200 Strong transcription Muscle Satellite Cultured Cells --
29 chr2:189941800-189947400 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
30 chr2:189942400-189954200 Weak transcription Ovary ovary
31 chr2:189942600-189947200 Weak transcription Breast Myoepithelial Primary Cells Breast
32 chr2:189942600-189947400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
33 chr2:189942800-189947400 Weak transcription Fetal Intestine Large intestine
34 chr2:189942800-189961800 Weak transcription Aorta Aorta
35 chr2:189943600-189947000 Weak transcription Colon Smooth Muscle Colon
36 chr2:189943800-189947400 Weak transcription Fetal Stomach stomach
37 chr2:189944000-189953600 Weak transcription Duodenum Smooth Muscle Duodenum
38 chr2:189944800-189950400 Weak transcription HUVEC blood vessel
39 chr2:189945600-189952800 Weak transcription HUES6 Cell Line embryonic stem cell
40 chr2:189945800-189947000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
41 chr2:189945800-189947200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
42 chr2:189945800-189947400 Weak transcription Fetal Muscle Leg muscle
43 chr2:189945800-189949800 Weak transcription Fetal Muscle Trunk muscle
44 chr2:189946000-189947000 Weak transcription NHLF lung
45 chr2:189946000-189947400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
46 chr2:189946000-189947400 Weak transcription Stomach Smooth Muscle stomach
47 chr2:189946000-189947400 Weak transcription HSMMtube muscle
48 chr2:189946000-189949000 Enhancers Fetal Lung lung
49 chr2:189946200-189947400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
50 chr2:189946600-189949000 Genic enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived

Quick Search:


  
Input of quick search could be:

what's new

Quick links

Copyright © 2015, Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences. All Rights Reserved Feedback
Last update: Aug 31, 2015