The 2.0 version of rSNPBase

Variant report

Variant rs56310996
Chromosome Location chr2:189948696-189948697
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:54 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:189895600-189965200 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
2 chr2:189896200-189962400 Weak transcription Left Ventricle heart
3 chr2:189897000-189949000 Weak transcription HUES64 Cell Line embryonic stem cell
4 chr2:189900800-189964400 Weak transcription ES-WA7 Cell Line embryonic stem cell
5 chr2:189904400-189951000 Weak transcription Fetal Adrenal Gland Adrenal Gland
6 chr2:189912400-189961600 Weak transcription ES-I3 Cell Line embryonic stem cell
7 chr2:189915000-189950600 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
8 chr2:189915400-189951000 Strong transcription Osteobl bone
9 chr2:189922800-189980800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
10 chr2:189929600-189951400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
11 chr2:189933000-189960400 Weak transcription Placenta Amnion Placenta Amnion
12 chr2:189933000-189980200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
13 chr2:189933800-189957800 Weak transcription Fetal Intestine Small intestine
14 chr2:189936600-189969200 Weak transcription Liver Liver
15 chr2:189938200-189951200 Strong transcription NH-A brain
16 chr2:189938400-189951800 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
17 chr2:189941200-189975000 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
18 chr2:189942400-189954200 Weak transcription Ovary ovary
19 chr2:189942800-189961800 Weak transcription Aorta Aorta
20 chr2:189944000-189953600 Weak transcription Duodenum Smooth Muscle Duodenum
21 chr2:189944800-189950400 Weak transcription HUVEC blood vessel
22 chr2:189945600-189952800 Weak transcription HUES6 Cell Line embryonic stem cell
23 chr2:189945800-189949800 Weak transcription Fetal Muscle Trunk muscle
24 chr2:189946000-189949000 Enhancers Fetal Lung lung
25 chr2:189946600-189949000 Genic enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
26 chr2:189947200-189951000 Genic enhancers Muscle Satellite Cultured Cells --
27 chr2:189947200-189961200 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
28 chr2:189947400-189948800 Genic enhancers Fetal Muscle Leg muscle
29 chr2:189947400-189948800 Enhancers Skeletal Muscle Male skeletal muscle
30 chr2:189947400-189949000 Genic enhancers Foreskin Fibroblast Primary Cells skin02 Skin
31 chr2:189947400-189949400 Genic enhancers HSMM muscle
32 chr2:189947400-189950600 Strong transcription Stomach Smooth Muscle stomach
33 chr2:189947400-189951200 Genic enhancers NHLF lung
34 chr2:189947400-189958000 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
35 chr2:189947600-189951000 Strong transcription Adipose Nuclei Adipose
36 chr2:189947600-189961800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
37 chr2:189947600-189980800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
38 chr2:189947800-189951400 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
39 chr2:189947800-189957000 Weak transcription Rectal Smooth Muscle rectum
40 chr2:189948200-189949400 Strong transcription A549 lung
41 chr2:189948200-189949600 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
42 chr2:189948200-189950200 Enhancers Fetal Stomach stomach
43 chr2:189948200-189950400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
44 chr2:189948200-189950400 Weak transcription Fetal Intestine Large intestine
45 chr2:189948200-189950600 Weak transcription Fetal Kidney kidney
46 chr2:189948200-189950800 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
47 chr2:189948200-189957800 Weak transcription Psoas Muscle Psoas
48 chr2:189948200-189958000 Weak transcription Skeletal Muscle Female skeletal muscle
49 chr2:189948200-189959200 Weak transcription Fetal Brain Male brain
50 chr2:189948200-189980600 Weak transcription Placenta Placenta

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Last update: Aug 31, 2015