The 2.0 version of rSNPBase

Variant report

Variant rs55784828
Chromosome Location chr2:189956130-189956131
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:53 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:189895600-189965200 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
2 chr2:189896200-189962400 Weak transcription Left Ventricle heart
3 chr2:189900800-189964400 Weak transcription ES-WA7 Cell Line embryonic stem cell
4 chr2:189912400-189961600 Weak transcription ES-I3 Cell Line embryonic stem cell
5 chr2:189922800-189980800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
6 chr2:189933000-189960400 Weak transcription Placenta Amnion Placenta Amnion
7 chr2:189933000-189980200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
8 chr2:189933800-189957800 Weak transcription Fetal Intestine Small intestine
9 chr2:189936600-189969200 Weak transcription Liver Liver
10 chr2:189941200-189975000 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
11 chr2:189942800-189961800 Weak transcription Aorta Aorta
12 chr2:189947200-189961200 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
13 chr2:189947400-189958000 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
14 chr2:189947600-189961800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
15 chr2:189947600-189980800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
16 chr2:189947800-189957000 Weak transcription Rectal Smooth Muscle rectum
17 chr2:189948200-189957800 Weak transcription Psoas Muscle Psoas
18 chr2:189948200-189958000 Weak transcription Skeletal Muscle Female skeletal muscle
19 chr2:189948200-189959200 Weak transcription Fetal Brain Male brain
20 chr2:189948200-189980600 Weak transcription Placenta Placenta
21 chr2:189948600-189974800 Weak transcription Breast Myoepithelial Primary Cells Breast
22 chr2:189950200-189961600 Weak transcription Sigmoid Colon Sigmoid Colon
23 chr2:189950800-189961400 Weak transcription Fetal Kidney kidney
24 chr2:189950800-189977800 Weak transcription Fetal Intestine Large intestine
25 chr2:189951800-189961400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
26 chr2:189952000-189961600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
27 chr2:189952200-189956800 Strong transcription HSMM muscle
28 chr2:189952400-189956200 Strong transcription NH-A brain
29 chr2:189952800-189957200 Strong transcription HUES6 Cell Line embryonic stem cell
30 chr2:189953400-189956400 Genic enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
31 chr2:189953400-189957000 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
32 chr2:189953800-189958000 Strong transcription A549 lung
33 chr2:189954000-189957000 Strong transcription Fetal Muscle Leg muscle
34 chr2:189954200-189957000 Strong transcription HUVEC blood vessel
35 chr2:189954200-189957400 Genic enhancers Foreskin Fibroblast Primary Cells skin02 Skin
36 chr2:189954400-189957000 Strong transcription Fetal Lung lung
37 chr2:189954800-189957400 Weak transcription Colon Smooth Muscle Colon
38 chr2:189954800-189980400 Weak transcription Ovary ovary
39 chr2:189955000-189957400 Weak transcription Fetal Stomach stomach
40 chr2:189955200-189956600 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
41 chr2:189955400-189956800 Weak transcription Fetal Muscle Trunk muscle
42 chr2:189955400-189957400 Genic enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
43 chr2:189955400-189959600 Weak transcription Duodenum Smooth Muscle Duodenum
44 chr2:189955600-189956600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
45 chr2:189955600-189957000 Weak transcription Stomach Smooth Muscle stomach
46 chr2:189955600-189957000 Weak transcription HSMMtube muscle
47 chr2:189955600-189957600 Weak transcription NHLF lung
48 chr2:189955800-189957600 Genic enhancers Osteobl bone
49 chr2:189955800-189957800 Genic enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
50 chr2:189955800-189957800 Genic enhancers Muscle Satellite Cultured Cells --

Quick Search:


  
Input of quick search could be:

what's new

Quick links

Copyright © 2015, Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences. All Rights Reserved Feedback
Last update: Aug 31, 2015