Variant report

Variant	rs1355192
Chromosome Location	chr2:210500861-210500862
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10178950	1.00[AMR][1000 genomes]
rs12694185	1.00[AMR][1000 genomes]
rs1355194	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1509466	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1509473	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1858140	1.00[AMR][1000 genomes]
rs1858141	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1976583	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2366111	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2663657	0.95[AFR][1000 genomes]
rs2710471	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2710481	0.95[AFR][1000 genomes]
rs2710483	0.95[AFR][1000 genomes]
rs2710484	0.95[AFR][1000 genomes]
rs2710485	0.95[AFR][1000 genomes]
rs288069	1.00[AMR][1000 genomes]
rs288074	1.00[AMR][1000 genomes]
rs288078	1.00[AMR][1000 genomes]
rs288082	1.00[AMR][1000 genomes]
rs288083	1.00[AMR][1000 genomes]
rs288086	1.00[AMR][1000 genomes]
rs288092	1.00[AMR][1000 genomes]
rs288093	1.00[AMR][1000 genomes]
rs6435532	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6435534	0.91[AFR][1000 genomes]
rs6744370	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7568267	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs925263	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754281	chr2:210484777-210543711	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210494800-210517800	Weak transcription	Aorta	Aorta
2	chr2:210496200-210506800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr2:210496200-210507000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:210496400-210502200	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr2:210498800-210501200	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr2:210499600-210501800	Enhancers	Brain Germinal Matrix	brain
7	chr2:210499800-210501000	Enhancers	Fetal Brain Female	brain
8	chr2:210499800-210501400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr2:210500000-210501200	Enhancers	Brain Angular Gyrus	brain
10	chr2:210500200-210501200	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr2:210500200-210501200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr2:210500200-210501200	Enhancers	Fetal Brain Male	brain
13	chr2:210500400-210501000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr2:210500400-210501200	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr2:210500400-210501200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr2:210500400-210501200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr2:210500400-210501200	Enhancers	Brain Anterior Caudate	brain
18	chr2:210500400-210501200	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr2:210500600-210501000	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr2:210500600-210501200	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr2:210500600-210501200	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr2:210500600-210501200	Enhancers	Muscle Satellite Cultured Cells	--
23	chr2:210500600-210501200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr2:210500600-210501200	Enhancers	Brain Substantia Nigra	brain
25	chr2:210500600-210501800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr2:210500800-210501200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr2:210500800-210501200	Enhancers	Pancreatic Islets	Pancreatic Islet
28	chr2:210500800-210501200	Enhancers	HMEC	breast
29	chr2:210500800-210501200	Enhancers	NHEK	skin

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